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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128548 (57 seq.)
>W1710893195
LNEN01000050
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1951
1874
-
Val
TAC
[ENA]
¡û
>W1711751677
MUNY01000048
Bacteroidota
Algoriphagus sp. A40 [MUNY]
34497
34422
-
Val
TAC
[ENA]
¡û
>W1711751678
MUNY01000048
Bacteroidota
Algoriphagus sp. A40 [MUNY]
34374
34299
-
Val
TAC
[ENA]
¡û
>W131146343
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
74766
74691
-
Val
TAC
[ENA]
¡û
>W131223185
AUBW01000018
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
37445
37522
+
Val
TAC
[ENA]
¡û
>W131223186
AUBW01000018
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
37568
37643
+
Val
TAC
[ENA]
¡û
>W131231139
AUIF01000012
Bacteroidota
Runella zeae DSM 19591 [AUIF]
69021
69096
+
Val
TAC
[ENA]
¡û
>W131231140
AUIF01000012
Bacteroidota
Runella zeae DSM 19591 [AUIF]
69160
69235
+
Val
TAC
[ENA]
¡û
>WENV180114975
OAPS01086758
[OAPS] marine metagenome; sea water
114
39
-
Val
TAC
[ENA]
¢þ
>WENV180245496
OBDM01047194
[OBDM] human gut metagenome; human gut
342
267
-
Val
TAC
[ENA]
¢þ
>WENV180247931
OBEQ010069456
[OBEQ] groundwater metagenome; groundwater
31191
31266
+
Val
TAC
[ENA]
¢þ
>WENV180292094
OBIV01307826
[OBIV] soil metagenome; Clay
377
302
-
Val
TAC
[ENA]
¢þ
>WENV181171993
OEIV010440021
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
256
181
-
Val
TAC
[ENA]
¢þ
>WENV181368523
OFQL01015919
[OFQL] freshwater metagenome; Freshwater Lake
196
121
-
Val
TAC
[ENA]
¢þ
>WENV181369609
OFQP01011744
[OFQP] freshwater metagenome; Freshwater Lake
783
708
-
Val
TAC
[ENA]
¢þ
>WENV181370783
OFQT01010737
[OFQT] freshwater metagenome; Freshwater Lake
141
66
-
Val
TAC
[ENA]
¢þ
>WENV181454647
OGED01017448
[OGED] metagenome; Human gut stool
807
732
-
Val
TAC
[ENA]
¢þ
>WENV181559878
OGJA01001277
[OGJA] metagenome; Human gut stool
2384
2307
-
Val
TAC
[ENA]
¢þ
>W141168917
AXVJ01000010
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
51663
51586
-
Val
TAC
[ENA]
¡û
>W141168918
AXVJ01000011
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
79
2
-
Val
TAC
[ENA]
¡û
>WENV181839150
OGVN01075882
[OGVN] freshwater metagenome; freshwater
330
255
-
Val
TAC
[ENA]
¢þ
>WENV182261489
OHTL01000045
[OHTL] human gut metagenome; feces
696
771
+
Val
TAC
[ENA]
¢þ
>WENV182405438
OIEV01004703
[OIEV] human gut metagenome; human gut
976
901
-
Val
TAC
[ENA]
¢þ
>WENV182467146
OIOT01000298
[OIOT] human gut metagenome; human gut
4118
4043
-
Val
TAC
[ENA]
¢þ
>WENV182623492
OJKL01001660
[OJKL] metagenome; faeces
2021
2096
+
Val
TAC
[ENA]
¢þ
>WENV183408930
OMAE01003313
[OMAE] human gut metagenome; feces
4406
4483
+
Val
TAC
[ENA]
¢þ
>WENV170035632
CDYM01025504
[CDYM] gut metagenome; human stools
95508
95431
-
Val
TAC
[ENA]
¢þ
>WENV170043231
CDYU01032468
[CDYU] gut metagenome; human stools
159943
160020
+
Val
TAC
[ENA]
¢þ
>WENV170998205
MWWI01043003
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
323
400
+
Val
TAC
[ENA]
¢þ
>C181193429
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
6754129
6754204
+
Val
TAC
-
¡û
>C181193430
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
6754245
6754320
+
Val
TAC
-
¡û
>C191073376
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
1632442
1632517
+
Val
TAC
-
¡û
>C191073377
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
1632646
1632721
+
Val
TAC
-
¡û
>C191073378
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
1632768
1632843
+
Val
TAC
-
¡û
>W1910129053
BHXQ01000005
Bacteroidota
Chryseotalea sanaruensis Ys [BHXQ]
286308
286383
+
Val
TAC
[ENA]
¡û
>W1910912855
NHPP01000003
Bacteroidota
Siphonobacter sp. SORGH_AS_0500 BAB-5404 [NHPP]
114
39
-
Val
TAC
[ENA]
¡û
>W1910912867
NHPP01000012
Bacteroidota
Siphonobacter sp. SORGH_AS_0500 BAB-5404 [NHPP]
139242
139166
-
Val
TAC
[ENA]
¡û
>W1910939700
NJAG01000004
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
27576
27500
-
Val
TAC
[ENA]
¡û
>W1911070288
NMPS01000248
Bacteroidota
Siphonobacter sp. BAB-5385 [NMPS]
27671
27595
-
Val
TAC
[ENA]
¡û
>W1810305992
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
3450584
3450659
+
Val
TAC
[ENA]
¡û
>W1810305993
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
3450683
3450759
+
Val
TAC
[ENA]
¡û
>W1810606292
QGOL01000017
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
73908
73983
+
Val
TAC
[ENA]
¡û
>W1810705062
QMIK01000007
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
26315
26390
+
Val
TAC
[ENA]
¡û
>W1810705063
QMIK01000007
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
26423
26498
+
Val
TAC
[ENA]
¡û
>W1810758675
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
545062
545137
+
Val
TAC
[ENA]
¡û
>W1810758676
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
545174
545249
+
Val
TAC
[ENA]
¡û
>C11118893
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
4602954
4602877
-
Val
TAC
[Ensembl]
¡û
>W1610050135
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
378
303
-
Val
TAC
[ENA]
¡û
>W1610050136
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
167
92
-
Val
TAC
[ENA]
¡û
>W1610753461
LNEN01000050
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1951
1874
-
Val
TAC
[ENA]
¡û
>W1710046534
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
378
303
-
Val
TAC
[ENA]
¡û
>W1710046535
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
167
92
-
Val
TAC
[ENA]
¡û
>W1710509416
FMXE01000035
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
16828
16753
-
Val
TAC
[ENA]
¡û
>W1710509417
FMXE01000035
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
16706
16631
-
Val
TAC
[ENA]
¡û
>W1710521858
FNGS01000007
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
178169
178094
-
Val
TAC
[ENA]
¡û
>W1710521859
FNGS01000007
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
178046
177969
-
Val
TAC
[ENA]
¡û
>W1710539782
FNVR01000019
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
77886
77811
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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