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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128709 (28 seq.)
>W1710991038
LPXI01000061
Bacteroidota
Myroides marinus [LPXI]
6620
6537
-
Tyr
GTA
[ENA]
¡û
>W1711005720
LQNU01000035
Bacteroidota
Myroides marinus [LQNU]
69968
70051
+
Tyr
GTA
[ENA]
¡û
>C171063315
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
1914786
1914869
+
Tyr
GTA
-
¡û
>C171063323
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
2944667
2944750
+
Tyr
GTA
-
¡û
>WENV180039434
LLBY010070275
[LLBY] soil metagenome; soil from tomato rhizosphere
1825
1744
-
Tyr
GTA
[ENA]
¡û
>WENV180039554
LLBY010090556
[LLBY] soil metagenome; soil from tomato rhizosphere
2482
2563
+
Tyr
GTA
[ENA]
¡û
>WENV180040576
LLBZ010001160
[LLBZ] soil metagenome; soil from tomato rhizosphere
31802
31721
-
Tyr
GTA
[ENA]
¡û
>WENV180041132
LLBZ010049799
[LLBZ] soil metagenome; soil from tomato rhizosphere
6546
6465
-
Tyr
GTA
[ENA]
¡û
>WENV183740139
PJUF01000444
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8218
8299
+
Tyr
GTA
[ENA]
¡û
>W141727221
JNCP01000099
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
18901
18818
-
Tyr
GTA
[ENA]
¡û
>W141727226
JNCP01000125
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
206
123
-
Tyr
GTA
[ENA]
¡û
>W1910578011
JUIX01000017
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
30508
30427
-
Tyr
GTA
[ENA]
¡û
>W2010100261
BJVF01000001
Bacteroidota
Flavobacterium glycines NBRC 105008 [BJVF]
361504
361423
-
Tyr
GTA
[ENA]
¡û
>W2010100273
BJVF01000006
Bacteroidota
Flavobacterium glycines NBRC 105008 [BJVF]
131205
131286
+
Tyr
GTA
[ENA]
¡û
>W2010663858
JACBJI010000001
Bacteroidota
Flavobacterium sp. MAH-1 [JACBJI]
628310
628229
-
Tyr
GTA
[ENA]
¡û
>W2010762248
JUIX01000017
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
30508
30427
-
Tyr
GTA
[ENA]
¡û
>C231324510
CP092832
Bacteroidota
Flavobacterium sp. HJ-32-4 [CP092832]
2954959
2955040
+
Tyr
GTA
-
¡û
>C231324515
CP092832
Bacteroidota
Flavobacterium sp. HJ-32-4 [CP092832]
3461897
3461816
-
Tyr
GTA
-
¡û
>C231636028
CP121111
Bacteroidota
Flavobacterium nitratireducens JCM 17678 [CP121111]
555807
555890
+
Tyr
GTA
-
¡û
>C231636029
CP121111
Bacteroidota
Flavobacterium nitratireducens JCM 17678 [CP121111]
556022
556103
+
Tyr
GTA
-
¡û
>C231636048
CP121111
Bacteroidota
Flavobacterium nitratireducens JCM 17678 [CP121111]
2745071
2745152
+
Tyr
GTA
-
¡û
>W1511481073
JWJO01000025
Bacteroidota
Myroides marinus L41 [JWJO]
69959
70042
+
Tyr
GTA
[ENA]
¡û
>W1610845710
LPXI01000061
Bacteroidota
Myroides marinus [LPXI]
6620
6537
-
Tyr
GTA
[ENA]
¡û
>W1610856370
LQNU01000035
Bacteroidota
Myroides marinus [LQNU]
69968
70051
+
Tyr
GTA
[ENA]
¡û
>W1710507373
FMVF01000012
Bacteroidota
Flavobacterium caeni [FMVF]
17909
17826
-
Tyr
GTA
[ENA]
¡û
>W1710507379
FMVF01000017
Bacteroidota
Flavobacterium caeni [FMVF]
50330
50413
+
Tyr
GTA
[ENA]
¡û
>W1710540838
FNXE01000007
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
11256
11173
-
Tyr
GTA
[ENA]
¡û
>W1710541898
FNYS01000006
Bacteroidota
Myroides marinus [FNYS]
33313
33230
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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