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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129111 (20 seq.)
>W131213799
ATTH01000001
Rhodothermota
Salisaeta longa DSM 21114 [ATTH]
2536782
2536707
-
Glu
CTC
[ENA]
¡û
>W131182122
ARQC01000221
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
1195
1272
+
Glu
TTC
[ENA]
¡û
>C024106
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1342677
1342754
+
Glu
TTC
[Ensembl]
¡û
>WENV180318178
OBKM01000035
[OBKM] metagenome; water
24932
25008
+
Glu
TTC
[ENA]
¢þ
>C181192095
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1379590
1379667
+
Glu
TTC
-
¡û
>C191072359
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1346278
1346355
+
Glu
TTC
-
¡û
>C191072403
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1349426
1349503
+
Glu
TTC
-
¡û
>C191072449
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1459426
1459503
+
Glu
TTC
-
¡û
>C191072493
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1375884
1375961
+
Glu
TTC
-
¡û
>C191072538
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1416903
1416980
+
Glu
TTC
-
¡û
>W1910785962
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
4298295
4298370
+
Glu
TTC
[ENA]
¡û
>W1910870041
NCQX01000013
Rhodothermota
Salinibacter ruber SP273 [NCQX]
23733
23810
+
Glu
TTC
[ENA]
¡û
>W1910870082
NCQY01000004
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
134
57
-
Glu
TTC
[ENA]
¡û
>W1910870127
NCQZ01000016
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
18258
18181
-
Glu
TTC
[ENA]
¡û
>W1910870176
NCRA01000006
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
102283
102206
-
Glu
TTC
[ENA]
¡û
>W1910870235
NCRB01000035
Rhodothermota
Salinivenus iranica CB7 [NCRB]
8595
8519
-
Glu
TTC
[ENA]
¡û
>W1910870242
NCRB01000066
Rhodothermota
Salinivenus iranica CB7 [NCRB]
7601
7526
-
Glu
CTC
[ENA]
¡û
>W1910870259
NCRC01000005
Rhodothermota
Salinivenus lutea DBO [NCRC]
36305
36380
+
Glu
CTC
[ENA]
¡û
>W1910870278
NCRC01000026
Rhodothermota
Salinivenus lutea DBO [NCRC]
23348
23424
+
Glu
TTC
[ENA]
¡û
>C131018225
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1439399
1439476
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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