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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129112 (18 seq.)
>W131182127
ARQC01000583
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
577
652
+
Ile
GAT
[ENA]
¡û
>C024120
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
3328320
3328246
-
Ile
GAT
[Ensembl]
¡û
>WENV180318192
OBKM01000054
[OBKM] metagenome; water
6879
6803
-
Ile
GAT
[ENA]
¢þ
>WENV170008761
APHM01004664
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
232
157
-
Ile
GAT
[ENA]
¢þ
>C181192109
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
3375809
3375734
-
Ile
GAT
-
¡û
>C191072373
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3538924
3538849
-
Ile
GAT
-
¡û
>C191072417
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
3353834
3353759
-
Ile
GAT
-
¡û
>C191072463
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
3562088
3562013
-
Ile
GAT
-
¡û
>C191072507
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
3307217
3307142
-
Ile
GAT
-
¡û
>C191072552
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
3511035
3510960
-
Ile
GAT
-
¡û
>W1910785955
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
2619799
2619874
+
Ile
GAT
[ENA]
¡û
>W1910870058
NCQX01000056
Rhodothermota
Salinibacter ruber SP273 [NCQX]
24622
24547
-
Ile
GAT
[ENA]
¡û
>W1910870101
NCQY01000023
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
41004
40929
-
Ile
GAT
[ENA]
¡û
>W1910870145
NCQZ01000040
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
168361
168436
+
Ile
GAT
[ENA]
¡û
>W1910870194
NCRA01000031
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
41627
41552
-
Ile
GAT
[ENA]
¡û
>W1910870220
NCRB01000009
Rhodothermota
Salinivenus iranica CB7 [NCRB]
42612
42537
-
Ile
GAT
[ENA]
¡û
>W1910870281
NCRC01000028
Rhodothermota
Salinivenus lutea DBO [NCRC]
24767
24842
+
Ile
GAT
[ENA]
¡û
>C131018239
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
3399315
3399240
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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