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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129208 (29 seq.)
>W1711081284
LSSA01000400
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
41813
41736
-
Leu
TAA
[ENA]
¡û
>w002272
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
11066
11145
+
Leu
TAA
[ENA]
¡û
>C08006943
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3440940
3440866
-
Leu
TAA
[Ensembl]
¡û
>WENV171003144
NNBT01001888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
373
450
+
Leu
TAA
[ENA]
¢þ
>WENV171003452
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
31442
31365
-
Leu
TAA
[ENA]
¢þ
>WENV171003736
NNBV01000559
[NNBV] plant metagenome; symbiotic tissue sample KVS11
3779
3856
+
Leu
TAA
[ENA]
¢þ
>C181105256
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4344192
4344117
-
Leu
TAA
-
¡û
>C181137776
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
861944
861869
-
Leu
TAA
-
¡û
>C181137835
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5266219
5266142
-
Leu
TAA
-
¡û
>W1910020513
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6396959
6397036
+
Leu
TAA
[ENA]
¡û
>W1910596201
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
23226
23149
-
Leu
TAA
[ENA]
¡û
>W1910596292
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
23190
23113
-
Leu
TAA
[ENA]
¡û
>W1910596349
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
249381
249304
-
Leu
TAA
[ENA]
¡û
>W1910596425
LAHA01000001
Cyanobacteriota
Nostoc linckia z4 [LAHA]
241040
240963
-
Leu
TAA
[ENA]
¡û
>W1910596530
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
23098
23021
-
Leu
TAA
[ENA]
¡û
>W1910596600
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
36475
36398
-
Leu
TAA
[ENA]
¡û
>W1910596683
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
15282
15205
-
Leu
TAA
[ENA]
¡û
>W1910596802
LAHE01000059
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27871
27948
+
Leu
TAA
[ENA]
¡û
>W1910596876
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
15244
15167
-
Leu
TAA
[ENA]
¡û
>W1910596943
LAHG01000042
Cyanobacteriota
Nostoc linckia z14 [LAHG]
23199
23122
-
Leu
TAA
[ENA]
¡û
>W1910597039
LAHH01000043
Cyanobacteriota
Nostoc linckia z15 [LAHH]
2971
2894
-
Leu
TAA
[ENA]
¡û
>W1910597113
LAHI01000046
Cyanobacteriota
Nostoc linckia z16 [LAHI]
17575
17498
-
Leu
TAA
[ENA]
¡û
>W1910597210
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
15358
15281
-
Leu
TAA
[ENA]
¡û
>W1910792661
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
20907
20984
+
Leu
TAA
[ENA]
¡û
>W1911118683
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12654
12579
-
Leu
TAA
[ENA]
¡û
>W1911118720
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
468390
468315
-
Leu
TAA
[ENA]
¡û
>W1911118786
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
53422
53499
+
Leu
TAA
[ENA]
¡û
>W1911244302
NSHF01000587
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2841
2918
+
Leu
TAA
[ENA]
¡û
>C131004181
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3486160
3486083
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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