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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129302 (36 seq.)
>W131027564
AJAL01000004
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
315826
315910
+
Leu
AAG
[ENA]
¡û
>W131032005
AJDQ01000008
Bacillota
Enterococcus gilvus ATCC BAA-350 [AJDQ]
84345
84260
-
Leu
AAG
[ENA]
¡û
>W1711108400
LTTS01000082
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
49162
49246
+
Leu
AAG
[ENA]
¡û
>W1711114872
LTZR01000009
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
49161
49245
+
Leu
AAG
[ENA]
¡û
>W1711187043
LWOS01000127
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
58731
58647
-
Leu
AAG
[ENA]
¡û
>W131201671
ASWF01000004
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
309386
309470
+
Leu
AAG
[ENA]
¡û
>W131201767
ASWH01000001
Bacillota
Enterococcus gilvus ATCC BAA-350 [ASWH]
1411785
1411870
+
Leu
AAG
[ENA]
¡û
>W1712067827
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
864253
864337
+
Leu
AAG
[ENA]
¡û
>W1712068857
NGLY01000001
Bacillota
Enterococcus sp. 12E11_DIV0728 [NGLY]
1461209
1461124
-
Leu
AAG
[ENA]
¡û
>W1712096872
NIBK01000001
Bacillota
Enterococcus sp. 12F9_DIV0723 [NIBK]
1331057
1331142
+
Leu
AAG
[ENA]
¡û
>WENV180406893
OBUQ01000127
[OBUQ] human gut metagenome; faeces
49182
49266
+
Leu
AAG
[ENA]
¡û
>WENV182953071
OKVX01003090
[OKVX] human gut metagenome; human gut
5097
5181
+
Leu
AAG
[ENA]
¡û
>WENV170541339
CXPN01000240
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
2594
2510
-
Leu
AAG
[ENA]
¡û
>WENV170541643
CXPR01000663
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
505
421
-
Leu
AAG
[ENA]
¡û
>C181194557
CP030932
Bacillota
Enterococcus gilvus CR1 [CP030932]
916521
916606
+
Leu
AAG
-
¡û
>W1910177931
BJED01000008
Bacillota
Enterococcus sp. 190-7 [BJED]
25797
25713
-
Leu
AAG
[ENA]
¡û
>W2010091308
BJED01000008
Bacillota
Enterococcus sp. 190-7 [BJED]
25797
25713
-
Leu
AAG
[ENA]
¡û
>W2010277229
CABLCA020000013
Bacillota
Enterococcus raffinosus [CABLCA]
30286
30202
-
Leu
AAG
[ENA]
¡û
>W2012499965
WXOO01000015
Bacillota
Enterococcus raffinosus BIOML-A1 [WXOO]
58777
58693
-
Leu
AAG
[ENA]
¡û
>W2110158439
JAASIQ010000015
Bacillota
Enterococcus raffinosus K36 [JAASIQ]
58777
58693
-
Leu
AAG
[ENA]
¡û
>W2110158890
JAASJS010000009
Bacillota
Enterococcus gilvus K61 [JAASJS]
12374
12290
-
Leu
AAG
[ENA]
¡û
>W2110512920
JAFLVV010000023
Bacillota
Enterococcus hulanensis DIV0164 [JAFLVV]
14190
14106
-
Leu
AAG
[ENA]
¡û
>W2110512941
JAFLVW010000009
Bacillota
Enterococcus hulanensis DIV0645b [JAFLVW]
157127
157211
+
Leu
AAG
[ENA]
¡û
>C211315368
CP072888
Bacillota
Enterococcus raffinosus F162_2 [CP072888]
1394758
1394842
+
Leu
AAG
-
¡û
>C211388339
CP081846
Bacillota
Enterococcus raffinosus CX012922 [CP081846]
1259285
1259369
+
Leu
AAG
-
¡û
>C231490747
CP104392
Bacillota
Enterococcus raffinosus HG-5 [CP104392]
1336016
1336100
+
Leu
AAG
-
¡û
>C231497969
CP104762
Bacillota
Enterococcus raffinosus ATCC 49464 [CP104762]
1454739
1454823
+
Leu
AAG
-
¡û
>C231498036
CP104764
Bacillota
Enterococcus raffinosus Er676 [CP104764]
1314390
1314474
+
Leu
AAG
-
¡û
>W1610021440
ATKJ02000013
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
30286
30202
-
Leu
AAG
[ENA]
¡û
>W1610066507
BCPU01000011
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
26983
27067
+
Leu
AAG
[ENA]
¡û
>W1610462408
FKLT01000053
Bacillota
Enterococcus faecium [FKLT]
21231
21147
-
Leu
AAG
[ENA]
¡û
>W1710018135
ATKJ02000013
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
30286
30202
-
Leu
AAG
[ENA]
¡û
>W1710063845
BCPU01000011
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
26983
27067
+
Leu
AAG
[ENA]
¡û
>W1710461578
FKLT01000053
Bacillota
Enterococcus faecium [FKLT]
21231
21147
-
Leu
AAG
[ENA]
¡û
>W1710659343
JXKO01000005
Bacillota
Enterococcus gilvus [JXKO]
171732
171817
+
Leu
AAG
[ENA]
¡û
>W1710659766
JXLA01000012
Bacillota
Enterococcus raffinosus [JXLA]
49705
49789
+
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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