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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129604 (13 seq.)
>C171060562
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
1659411
1659493
+
Leu
TAG
-
¡û
>C016764
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
853155
853071
-
Leu
TAG
[Ensembl]
¡û
>C018246
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1238940
1239021
+
Leu
TAG
[Ensembl]
¡û
>w018050
AASE01000020
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
22833
22919
+
Leu
TAG
[ENA]
¡û
>w006099
AAHJ01000006
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
71029
71115
+
Leu
TAG
[ENA]
¡û
>C08003520
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
923168
923086
-
Leu
TAG
[Ensembl]
¡û
>C08003595
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1425305
1425389
+
Leu
TAG
[Ensembl]
¡û
>WENV183812111
PYLN01000055
[PYLN] freshwater metagenome; meromictic lake
4438
4356
-
Leu
TAG
[ENA]
¢þ
>WENV170625127
FUWD013192081
[FUWD] metagenome; unknown
6978
6896
-
Leu
TAG
[ENA]
¢þ
>WENV170625129
FUWD013192082
[FUWD] metagenome; unknown
280
198
-
Leu
TAG
[ENA]
¢þ
>WENV170633384
FUWD013395293
[FUWD] metagenome; unknown
6978
6896
-
Leu
TAG
[ENA]
¢þ
>WENV170633386
FUWD013395294
[FUWD] metagenome; unknown
280
198
-
Leu
TAG
[ENA]
¢þ
>W09103363
AAJD01000012
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
51459
51541
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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