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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129643 (8 seq.)
>A171006249
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
1830511
1830588
+
Gly
TCC
-
¡û
>A171006268
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
1830507
1830584
+
Gly
TCC
-
¡û
>A171006287
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
1830509
1830586
+
Gly
TCC
-
¡û
>A171006306
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
1830511
1830588
+
Gly
TCC
-
¡û
>A171006325
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
1830511
1830588
+
Gly
TCC
-
¡û
>WENV180582852
OCMR01100567
[OCMR] metagenome; diffuse fluid
108
185
+
Gly
TCC
[ENA]
¢þ
>At0159
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
1830495
1830572
+
Gly
TCC
[Ensembl]
¡û
>W1610000292
AAVI01000003
Thermoproteota
Metallosphaera sedula DSM 5348 [AAVI]
231318
231241
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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