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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129703 (15 seq.)
>W1711414405
MGZL01000013
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
8212
8135
-
Pro
TGG
[ENA]
¡û
>W131228741
AUGE01000029
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
6672
6595
-
Pro
TGG
[ENA]
¡û
>C010023
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2090547
2090470
-
Pro
TGG
[Ensembl]
¡û
>C010259
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2619323
2619246
-
Pro
TGG
[Ensembl]
¡û
>w024792
AAZA01000018
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
89632
89711
+
Pro
TGG
[ENA]
¡û
>W08010633
ABRF01000005
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
94002
93928
-
Pro
TGG
[ENA]
¡û
>C08005192
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1400055
1400132
+
Pro
TGG
[Ensembl]
¡û
>WENV183692544
ORMF011935910
[ORMF] groundwater metagenome; groundwater
4460
4383
-
Pro
TGG
[ENA]
¢þ
>WENV170661490
JXWV01039389
[JXWV] soil metagenome; rice field; organic FYM Plot
369
446
+
Pro
TGG
[ENA]
¢þ
>W09133646
ACPJ01000086
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
8244
8167
-
Pro
TGG
[ENA]
¡û
>C09106421
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3558418
3558341
-
Pro
TGG
[Ensembl]
¡û
>W1510006444
BAZF01000015
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
89912
89989
+
Pro
TGG
[ENA]
¡û
>C11109564
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1279975
1280052
+
Pro
TGG
[Ensembl]
¡û
>W1511500985
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1301230
1301307
+
Pro
TGG
[ENA]
¡û
>W1710087152
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
293737
293814
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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