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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129953 (15 seq.)
>A171002952
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1705979
1705902
-
Arg
TCT
-
¡û
>A171002953
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1684803
1684726
-
Arg
TCT
-
¡û
>A179000314
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
2267674
2267765
+
Arg
TCT
-
¡û
>WENV180014092
FPIC01051740
[FPIC] soil metagenome; Soil
7715
7792
+
Arg
TCT
[ENA]
¢þ
>At0218
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
486542
486449
-
Arg
GCG
[Ensembl]
¡û
>At0220
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
842404
842327
-
Arg
TCT
[Ensembl]
¡û
>At0236
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
78069
78162
+
Arg
GCG
[Ensembl]
¡û
>At0251
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
372012
371935
-
Arg
TCT
[Ensembl]
¡û
>At0282
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
51883
51976
+
Arg
GCG
[Ensembl]
¡û
>At0299
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1327527
1327620
+
Arg
TCT
[Ensembl]
¡û
>At0343
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1424981
1425078
+
Arg
TCT
[Ensembl]
¡û
>At0364
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1020675
1020581
-
Arg
GCG
[Ensembl]
¡û
>WENV170574218
FLYM01014615
[FLYM] hot springs metagenome; Sediment
1319
1242
-
Arg
TCT
[ENA]
¢þ
>W1911075115
NMUE01000015
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
34019
34096
+
Arg
TCT
[ENA]
¡û
>W1911075155
NMUF01000076
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
3552
3629
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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