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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129954 (9 seq.)
>WENV180583020
OCMR01160906
[OCMR] metagenome; diffuse fluid
72
148
+
Asp
GTC
[ENA]
¢þ
>WENV181409068
OGCH01043356
[OGCH] hot springs metagenome; hot springs
502
579
+
Asp
GTC
[ENA]
¢þ
>At0225
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1226102
1226004
-
Asp
GTC
[Ensembl]
¡û
>At0278
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1804398
1804300
-
Asp
GTC
[Ensembl]
¡û
>At0283
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
178202
178311
+
Asp
GTC
[Ensembl]
¡û
>At0346
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1685379
1685497
+
Asp
GTC
[Ensembl]
¡û
>At0381
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
667818
667892
+
Asp
GTC
[Ensembl]
¡û
>W1910595858
JZWU01000200
Thermoproteota
Vulcanisaeta sp. AZ3 [JZWU]
1784
1861
+
Asp
GTC
[ENA]
¡û
>W1610060749
BCLI01000004
Thermoproteota
Vulcanisaeta thermophila CBA1501 [BCLI]
128515
128592
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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