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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131028 (38 seq.)
>W131229101
AUGN01000003
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
318995
318913
-
Leu
CAA
[ENA]
¡û
>WENV180038876
LLBY010009954
[LLBY] soil metagenome; soil from tomato rhizosphere
82
2
-
Leu
CAA
[ENA]
¡û
>WENV180040638
LLBZ010003497
[LLBZ] soil metagenome; soil from tomato rhizosphere
13082
13162
+
Leu
CAA
[ENA]
¡û
>WENV180377823
OBON01143415
[OBON] marine metagenome; sea water
283
203
-
Trp
CCA
[ENA]
¡û
>WENV180390088
OBPK01022964
[OBPK] marine metagenome; Sterile flask
548
628
+
Leu
CAA
[ENA]
¡û
>WENV180592122
OCOV01194705
[OCOV] marine metagenome; ENVO:01000301
34
114
+
Leu
CAA
[ENA]
¡û
>WENV180593940
OCOY01004768
[OCOY] marine metagenome; ENVO:00002010
238
158
-
Leu
CAA
[ENA]
¡û
>WENV180637351
OCRG01011252
[OCRG] marine metagenome; seawater
212
132
-
Leu
CAA
[ENA]
¡û
>WENV181843495
OGVU01020018
[OGVU] freshwater metagenome; freshwater
724
644
-
Leu
CAA
[ENA]
¡û
>WENV183710273
PDWI01043168
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1110
1030
-
Leu
CAA
[ENA]
¡û
>WENV170229706
CEQG01150887
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
790
708
-
Leu
CAA
[ENA]
¡û
>WENV170572711
FLOH01001196
[FLOH] marine metagenome; water
10332
10414
+
Leu
CAA
[ENA]
¡û
>WENV170923720
MDTG01053683
[MDTG] marine metagenome; seawater
1046
966
-
Leu
CAA
[ENA]
¡û
>W1910547647
FZNY01000001
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
1320749
1320669
-
Leu
CAA
[ENA]
¡û
>W1911587303
PJQW01000013
Bacteroidota
Flavobacterium sp. J27 [PJQW]
49630
49550
-
Leu
CAA
[ENA]
¡û
>W2010310987
CABWML010000008
Bacteroidota
Flavobacterium sp. 9AF [CABWML]
155218
155298
+
Leu
CAA
[ENA]
¡û
>W2010429408
FZNY01000001
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
1320749
1320669
-
Leu
CAA
[ENA]
¡û
>W2011196649
PJQW01000013
Bacteroidota
Flavobacterium sp. J27 [PJQW]
49630
49550
-
Leu
CAA
[ENA]
¡û
>W2011980728
VDCZ01000008
Bacteroidota
Flavobacterium sp. TP390 [VDCZ]
47851
47931
+
Leu
CAA
[ENA]
¡û
>W2012011078
VEVQ02000013
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
77362
77442
+
Leu
CAA
[ENA]
¡û
>W2012424953
WQLW01000008
Bacteroidota
Flavobacterium sp. TP390 [WQLW]
47851
47931
+
Leu
CAA
[ENA]
¡û
>W2110021570
BMEP01000003
Bacteroidota
Dokdonia pacifica CGMCC 1.12184 [BMEP]
233532
233452
-
Leu
CAA
[ENA]
¡û
>W2110657393
JAHWDP010000004
Bacteroidota
Aureisphaera sp. CAU 1614 [JAHWDP]
101522
101602
+
Leu
CAA
[ENA]
¡û
>C211026267
AP024749
Bacteroidota
Flavobacterium sp. KK2020170 [AP024749]
560312
560232
-
Leu
CAA
-
¡û
>C231270805
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
890506
890426
-
Leu
CAA
-
¡û
>C231293561
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
1125892
1125812
-
Leu
CAA
-
¡û
>C231343477
CP094358
Bacteroidota
Abyssalbus ytuae MT3330 [CP094358]
2497940
2497860
-
Leu
CAA
-
¡û
>C231524774
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
1125398
1125318
-
Leu
CAA
-
¡û
>C231525088
CP110005
Bacteroidota
Flavobacterium sp. N2270 [CP110005]
537343
537263
-
Leu
CAA
-
¡û
>C231525336
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
890497
890417
-
Leu
CAA
-
¡û
>C231604582
CP117969
Bacteroidota
Imtechella halotolerans JCM 17677 [CP117969]
2325654
2325574
-
Leu
CAA
-
¡û
>W2310012196
BPMA01000006
Bacteroidota
Capnocytophaga catalasegens KC07084 [BPMA]
16845
16765
-
Leu
CAA
[ENA]
¡û
>WENV043116
AACY022292866
Marine microbial communities from Global Ocean Sampling (GOS)
540
624
+
Leu
CAA
[ENA]
>WENV043264
AACY022306622
Marine microbial communities from Global Ocean Sampling (GOS)
725
643
-
Leu
CAA
[ENA]
>W1511526846
JYGZ01000005
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
306164
306244
+
Leu
CAA
[ENA]
¡û
>W121062920
AJJU01000003
Bacteroidota
Imtechella halotolerans K1 [AJJU]
86537
86619
+
Leu
CAA
[ENA]
¡û
>W1610626346
LICC01000002
Bacteroidota
Cryomorphaceae bacterium BACL21 MAG-121220-bin10 [LICC]
6269
6351
+
Leu
CAA
[ENA]
¡û
>W1710757473
LICC01000002
Bacteroidota
Cryomorphaceae bacterium BACL21 MAG-121220-bin10 [LICC]
6269
6351
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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