This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131431 (52 seq.)
>W1710988615
LPVJ01000019
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
31749
31667
-
Leu
TAG
[ENA]
¡û
>W1711069887
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
94553
94635
+
Leu
TAG
[ENA]
¡û
>W1711069905
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1843832
1843914
+
Leu
TAG
[ENA]
¡û
>W1711069926
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1845669
1845751
+
Leu
TAG
[ENA]
¡û
>W1711082835
LSUQ01000055
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
8858
8776
-
Leu
TAG
[ENA]
¡û
>W1711148420
LVKL01000115
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
8819
8901
+
Leu
TAG
[ENA]
¡û
>W1711795490
MWPS01000027
Bacillota
Ferroacidibacillus organovorans ferrooxidans [MWPS]
147532
147614
+
Leu
TAG
[ENA]
¡û
>W1711903001
MZGW01000014
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
544
626
+
Leu
TAG
[ENA]
¡û
>W1711903005
MZGW01000017
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
5488
5406
-
Leu
TAG
[ENA]
¡û
>C171109201
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396699
1396781
+
Leu
TAG
-
¡û
>C171109228
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424777
1424859
+
Leu
TAG
-
¡û
>C171109259
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108058
4107976
-
Leu
TAG
-
¡û
>C171109305
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081091
4081009
-
Leu
TAG
-
¡û
>C000803
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1843290
1843372
+
Leu
TAG
[Ensembl]
¡û
>C000831
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446175
4446093
-
Leu
TAG
[Ensembl]
¡û
>C000875
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4429669
4429587
-
Leu
TAG
[Ensembl]
¡û
>w017071
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1371
1287
-
Leu
TAG
[ENA]
¡û
>w017021
AAQV01000035
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
16361
16443
+
Leu
TAG
[ENA]
¡û
>w017002
AAQV01000011
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
63260
63176
-
Leu
TAG
[ENA]
¡û
>WENV180096875
MTBK01153178
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
265
186
-
Leu
TAG
[ENA]
¡û
>C08000726
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
617787
617869
+
Leu
TAG
[Ensembl]
¡û
>C08000767
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604125
2604046
-
Leu
TAG
[Ensembl]
¡û
>C08000793
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1916109
1916030
-
Leu
TAG
[Ensembl]
¡û
>WENV170720090
LSQX01140573
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
135
53
-
Leu
TAG
[ENA]
¡û
>WENV170976304
MTKZ01006449
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3424
3342
-
Leu
TAG
[ENA]
¡û
>W1910548225
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186204
186122
-
Leu
TAG
[ENA]
¡û
>W1910548261
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
448
530
+
Leu
TAG
[ENA]
¡û
>C151057233
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1167366
1167448
+
Leu
TAG
[Ensembl]
¡û
>C151057248
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178835
1178917
+
Leu
TAG
[Ensembl]
¡û
>C151057277
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724062
3723980
-
Leu
TAG
[Ensembl]
¡û
>W2010429986
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186204
186122
-
Leu
TAG
[ENA]
¡û
>W2010430022
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
448
530
+
Leu
TAG
[ENA]
¡û
>W2011624151
SLYC01000021
Bacillota
Serpentinicella alkaliphila DSM 100013 [SLYC]
600
682
+
Leu
TAG
[ENA]
¡û
>W2110461061
JAFBEE010000007
Bacillota
Alkaliphilus hydrothermalis DSM 25890 [JAFBEE]
131885
131803
-
Leu
TAG
[ENA]
¡û
>W2110461081
JAFBEE010000007
Bacillota
Alkaliphilus hydrothermalis DSM 25890 [JAFBEE]
129649
129567
-
Leu
TAG
[ENA]
¡û
>W2110622747
JAHLQK010000015
Bacillota
Alkaliphilus sp. MSJ-5 [JAHLQK]
803
721
-
Leu
TAG
[ENA]
¡û
>C211116816
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
2320911
2320993
+
Leu
TAG
-
¡û
>C211116868
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
574332
574250
-
Leu
TAG
-
¡û
>W1511527549
JYHU01000036
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
259
341
+
Leu
TAG
[ENA]
¡û
>W1511527558
JYHU01000045
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
258
340
+
Leu
TAG
[ENA]
¡û
>W1610843491
LPVJ01000019
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
31749
31667
-
Leu
TAG
[ENA]
¡û
>W1610910415
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
94553
94635
+
Leu
TAG
[ENA]
¡û
>W1610910433
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1843832
1843914
+
Leu
TAG
[ENA]
¡û
>W1610910454
LSFY01000001
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [LSFY]
1845669
1845751
+
Leu
TAG
[ENA]
¡û
>W1610921588
LSUQ01000055
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
8858
8776
-
Leu
TAG
[ENA]
¡û
>W1610959151
LVKL01000115
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
8819
8901
+
Leu
TAG
[ENA]
¡û
>W1710520423
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
549509
549427
-
Leu
TAG
[ENA]
¡û
>W1710520456
FNFP01000015
Bacillota
Natronincola ferrireducens [FNFP]
15171
15089
-
Leu
TAG
[ENA]
¡û
>W1710531819
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
428136
428054
-
Leu
TAG
[ENA]
¡û
>W1710531832
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
193
275
+
Leu
TAG
[ENA]
¡û
>W1710553651
FOHU01000004
Bacillota
Natronincola peptidivorans [FOHU]
296502
296420
-
Leu
TAG
[ENA]
¡û
>W1710590743
FRBG01000026
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [FRBG]
268
350
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK