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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131469 (18 seq.)
>W131063650
ANLA01000004
Bacteroidota
Xanthomarina gelatinilytica AK20 [ANLA]
750155
750239
+
Leu
TAA
[ENA]
¡û
>W1711689207
MSDT01000003
Bacteroidota
Mangrovimonas sp. DI 80 [MSDT]
95267
95351
+
Leu
TAA
[ENA]
¡û
>WENV170015880
AZIJ01002696
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1463
1547
+
Leu
TAA
[ENA]
¡û
>WENV170260501
CEQZ01054320
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
517
433
-
Leu
TAA
[ENA]
¡û
>W2010568042
JAATJT010000001
Bacteroidota
Gaetbulibacter sp. S0825 [JAATJT]
999864
999948
+
Leu
TAA
[ENA]
¡û
>W2012129892
VSFC01000042
Bacteroidota
Formosa sp. 1494 [VSFC]
257
173
-
Leu
TAA
[ENA]
¡û
>W2110277321
JACVXC010000004
Bacteroidota
Aestuariibaculum suncheonense SC17 [JACVXC]
363078
362994
-
Leu
TAA
[ENA]
¡û
>W2110277323
JACVXC010000004
Bacteroidota
Aestuariibaculum suncheonense SC17 [JACVXC]
362706
362622
-
Leu
TAA
[ENA]
¡û
>W2110277374
JACVXD010000006
Bacteroidota
Aestuariibaculum marinum IP7 [JACVXD]
32650
32734
+
Leu
TAA
[ENA]
¡û
>W2110277376
JACVXD010000006
Bacteroidota
Aestuariibaculum marinum IP7 [JACVXD]
33032
33116
+
Leu
TAA
[ENA]
¡û
>C241306908
CP133090
Bacteroidota
Aestuariibaculum sp. YM273 [CP133090]
1771991
1772075
+
Leu
TAA
-
¡û
>C241306910
CP133090
Bacteroidota
Aestuariibaculum sp. YM273 [CP133090]
1772386
1772470
+
Leu
TAA
-
¡û
>C241306954
CP133091
Bacteroidota
Mangrovimonas sp. YM274 [CP133091]
815517
815601
+
Leu
TAA
-
¡û
>C241329423
CP136709
Bacteroidota
Aestuariibaculum lutulentum L182 [CP136709]
1850649
1850733
+
Leu
TAA
-
¡û
>C241329425
CP136709
Bacteroidota
Aestuariibaculum lutulentum L182 [CP136709]
1851042
1851126
+
Leu
TAA
-
¡û
>W1511398882
JTDV01000008
Bacteroidota
Tamlana nanhaiensis FHC16 [JTDV]
88587
88673
+
Leu
TAA
[ENA]
¡û
>W1511592661
LBIO01000017
Bacteroidota
Mangrovimonas sp. TPBH4 [LBIO]
35029
34945
-
Leu
TAA
[ENA]
¡û
>W1511592736
LBIP01000019
Bacteroidota
Mangrovimonas xylaniphaga ST2L12 [LBIP]
90449
90533
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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