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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131748 (21 seq.)
>A171000005
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
455189
455264
+
Arg
TCG
-
¡û
>A171004418
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1050945
1050867
-
Arg
TCG
-
¡û
>A171006176
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1047802
1047724
-
Arg
TCG
-
¡û
>A171007462
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
651996
651922
-
Arg
TCG
-
¡û
>WENV180318369
OBKM01000560
[OBKM] metagenome; water
77
3
-
Arg
TCG
[ENA]
¢þ
>WENV170008833
APHM01009091
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
131
57
-
Arg
TCG
[ENA]
¢þ
>WENV170008982
APHM01017667
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
303
377
+
Arg
TCG
[ENA]
¢þ
>WENV170009031
APHM01020665
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
905
830
-
Arg
TCG
[ENA]
¢þ
>At0798
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
463914
463988
+
Arg
TCG
[Ensembl]
¡û
>WENV170702354
LKMJ01001481
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5972
5898
-
Arg
TCG
[ENA]
¢þ
>WENV170702970
LKMJ01005171
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
30
104
+
Arg
TCG
[ENA]
¢þ
>WENV170703577
LKMJ01013962
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3823
3897
+
Arg
TCG
[ENA]
¢þ
>WENV170703654
LKMJ01015018
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3339
3413
+
Arg
TCG
[ENA]
¢þ
>WENV170703866
LKMJ01017747
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6084
6158
+
Arg
TCG
[ENA]
¢þ
>W1910226856
FNFC01000002
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
212706
212780
+
Arg
TCG
[ENA]
¡û
>W1610003643
AGCY01000405
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
905
830
-
Arg
TCG
[ENA]
¡û
>W1610085092
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
433653
433576
-
Arg
TCG
[ENA]
¡û
>W1610085111
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
2030616
2030693
+
Arg
TCG
[ENA]
¡û
>W1610085150
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2073962
2074039
+
Arg
TCG
[ENA]
¡û
>W1610085189
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2115867
2115944
+
Arg
TCG
[ENA]
¡û
>W1610085291
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
442534
442457
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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