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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.132015 (58 seq.)
>W1711049579
LRQW01000674
Actinomycetota
Streptomyces scabiei [LRQW]
14259
14345
+
Ser
GCT
[ENA]
¡û
>W1711049641
LRQX01000808
Actinomycetota
Streptomyces scabiei [LRQX]
13623
13709
+
Ser
GCT
[ENA]
¡û
>W1711052216
LRSS01000747
Actinomycetota
Streptomyces scabiei [LRSS]
46932
47018
+
Ser
GCT
[ENA]
¡û
>W1711054048
LRTM01000778
Actinomycetota
Streptomyces scabiei [LRTM]
13641
13727
+
Ser
GCT
[ENA]
¡û
>W1711054113
LRTN01000854
Actinomycetota
Streptomyces scabiei [LRTN]
14252
14338
+
Ser
GCT
[ENA]
¡û
>W1711054185
LRTO01000713
Actinomycetota
Streptomyces scabiei [LRTO]
13647
13733
+
Ser
GCT
[ENA]
¡û
>W1711054444
LRTS01000712
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
13182
13268
+
Ser
GCT
[ENA]
¡û
>W1711089710
LSZY01000566
Actinomycetota
Streptomyces scabiei [LSZY]
14231
14317
+
Ser
GCT
[ENA]
¡û
>W1711783268
MVNW01000219
Actinomycetota
Streptomyces caniscabiei scabiei [MVNW]
10313
10227
-
Ser
GCT
[ENA]
¡û
>WENV180041749
LLBZ010402814
[LLBZ] soil metagenome; soil from tomato rhizosphere
194
109
-
Ser
GCT
[ENA]
¡û
>W141808304
JPPW01000201
Actinomycetota
Streptomyces scabiei [JPPW]
38464
38378
-
Ser
GCT
[ENA]
¡û
>W1911552963
PCGT01000108
Actinomycetota
Streptomyces scabiei ST129 [PCGT]
5892
5807
-
Ser
GCT
[ENA]
¡û
>W2010705963
JACHJX010000001
Actinomycetota
Streptomyces scabiei SAI-025 [JACHJX]
9761
9846
+
Ser
GCT
[ENA]
¡û
>W2010706022
JACHJX010000003
Actinomycetota
Streptomyces scabiei SAI-025 [JACHJX]
1632115
1632200
+
Ser
GCT
[ENA]
¡û
>W2011176543
PCGT01000108
Actinomycetota
Streptomyces scabiei ST129 [PCGT]
5892
5807
-
Ser
GCT
[ENA]
¡û
>W2110161341
JAAVVL010000001
Actinomycetota
Streptomyces sp. ATCC 21386 [JAAVVL]
9677939
9677854
-
Ser
GCT
[ENA]
¡û
>W2110195597
JABXWF010000001
Actinomycetota
Streptomyces sp. ND05-01C [JABXWF]
57716
57631
-
Ser
GCT
[ENA]
¡û
>W2110195664
JABXWG010000001
Actinomycetota
Streptomyces sp. ND05-13A [JABXWG]
46075
45990
-
Ser
GCT
[ENA]
¡û
>W2110195734
JABXWH010000003
Actinomycetota
Streptomyces sp. ND05-3B [JABXWH]
46116
46031
-
Ser
GCT
[ENA]
¡û
>W2110195794
JABXWI010000001
Actinomycetota
Streptomyces sp. NE06-02D [JABXWI]
877375
877460
+
Ser
GCT
[ENA]
¡û
>W2110195870
JABXWJ010000003
Actinomycetota
Streptomyces sp. NE06-02F [JABXWJ]
46255
46170
-
Ser
GCT
[ENA]
¡û
>W2110292978
JACYXS010000002
Actinomycetota
Streptomyces sp. ID-03-3A [JACYXS]
809554
809639
+
Ser
GCT
[ENA]
¡û
>W2110293045
JACYXT010000005
Actinomycetota
Streptomyces sp. ID-01-6.2a [JACYXT]
453993
454078
+
Ser
GCT
[ENA]
¡û
>W2110293125
JACYXU010000022
Actinomycetota
Streptomyces sp. ID01-12c [JACYXU]
31230
31314
+
Ser
GCT
[ENA]
¡û
>W2110563045
JAGPOR010000334
Actinomycetota
Streptomyces sp. AC495_CC817 [JAGPOR]
137761
137846
+
Ser
GCT
[ENA]
¡û
>C211061166
CP043956
Actinomycetota
Streptomyces sp. LBUM 1482 [CP043956]
4933787
4933702
-
Ser
GCT
-
¡û
>C211061234
CP043957
Actinomycetota
Streptomyces sp. LBUM 1480 [CP043957]
4788701
4788616
-
Ser
GCT
-
¡û
>C211061301
CP043958
Actinomycetota
Streptomyces sp. LBUM 1475 [CP043958]
4660856
4660771
-
Ser
GCT
-
¡û
>C211382376
CP080647
Actinomycetota
Streptomyces sp. MG28 [CP080647]
5180566
5180651
+
Ser
GCT
-
¡û
>C231032744
CP024989
Actinomycetota
Streptomyces sp. AMCC400023 [CP024989]
5156748
5156833
+
Ser
GCT
-
¡û
>C231316616
CP092431
Actinomycetota
Streptomyces deccanensis KCTC 19241 [CP092431]
5064338
5064253
-
Ser
GCT
-
¡û
>C231618129
CP119182
Actinomycetota
Streptomyces caniscabiei ID03-3A [CP119182]
5202348
5202433
+
Ser
GCT
-
¡û
>W2110778697
VWSN01000001
Actinomycetota
Streptomyces sp. LBUM 1488 [VWSN]
5065398
5065313
-
Ser
GCT
[ENA]
¡û
>W2110778764
VWSO01000001
Actinomycetota
Streptomyces sp. LBUM 1487 [VWSO]
4812466
4812381
-
Ser
GCT
[ENA]
¡û
>W2110778785
VWSP01000001
Actinomycetota
Streptomyces sp. LBUM 1486 [VWSP]
6152598
6152683
+
Ser
GCT
[ENA]
¡û
>W2110778897
VWSQ01000001
Actinomycetota
Streptomyces sp. LBUM 1485 [VWSQ]
3072809
3072724
-
Ser
GCT
[ENA]
¡û
>W2110778921
VWSR01000001
Actinomycetota
Streptomyces sp. LBUM 1484 [VWSR]
4889958
4890043
+
Ser
GCT
[ENA]
¡û
>W2110778986
VWSS01000001
Actinomycetota
Streptomyces sp. LBUM 1483 [VWSS]
4864224
4864309
+
Ser
GCT
[ENA]
¡û
>W2110779053
VWST01000001
Actinomycetota
Streptomyces sp. LBUM 1481 [VWST]
4714159
4714244
+
Ser
GCT
[ENA]
¡û
>W2110779120
VWSU01000001
Actinomycetota
Streptomyces sp. LBUM 1479 [VWSU]
4478076
4478161
+
Ser
GCT
[ENA]
¡û
>W2110779230
VWSV01000001
Actinomycetota
Streptomyces sp. LBUM 1478 [VWSV]
3575650
3575565
-
Ser
GCT
[ENA]
¡û
>W2110779300
VWSW01000001
Actinomycetota
Streptomyces sp. LBUM 1477 [VWSW]
4804958
4804873
-
Ser
GCT
[ENA]
¡û
>C241245852
CP122458
Actinomycetota
Streptomyces sp. 11x1 [CP122458]
5382093
5382178
+
Ser
GCT
-
¡û
>C10112501
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
5219468
5219554
+
Ser
GCT
[Ensembl]
¡û
>W1511346667
JRHJ01000076
Actinomycetota
Streptomyces galbus KCCM 41354 [JRHJ]
564785
564871
+
Ser
GCT
[ENA]
¡û
>W1511563892
LACL01000012
Actinomycetota
Streptomyces sp. FxanaA7 [LACL]
41527
41441
-
Ser
GCT
[ENA]
¡û
>W1511595787
LBNJ01000007
Actinomycetota
Streptomyces scabiei NRRL B-16523 [LBNJ]
11015
10929
-
Ser
GCT
[ENA]
¡û
>W1610061246
BCMM01000007
Actinomycetota
Streptomyces scabiei [BCMM]
220909
220995
+
Ser
GCT
[ENA]
¡û
>W1610890708
LRQW01000674
Actinomycetota
Streptomyces scabiei [LRQW]
14259
14345
+
Ser
GCT
[ENA]
¡û
>W1610890770
LRQX01000808
Actinomycetota
Streptomyces scabiei [LRQX]
13623
13709
+
Ser
GCT
[ENA]
¡û
>W1610893404
LRSS01000747
Actinomycetota
Streptomyces scabiei [LRSS]
46932
47018
+
Ser
GCT
[ENA]
¡û
>W1610895236
LRTM01000778
Actinomycetota
Streptomyces scabiei [LRTM]
13641
13727
+
Ser
GCT
[ENA]
¡û
>W1610895301
LRTN01000854
Actinomycetota
Streptomyces scabiei [LRTN]
14252
14338
+
Ser
GCT
[ENA]
¡û
>W1610895373
LRTO01000713
Actinomycetota
Streptomyces scabiei [LRTO]
13647
13733
+
Ser
GCT
[ENA]
¡û
>W1610895632
LRTS01000712
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
13182
13268
+
Ser
GCT
[ENA]
¡û
>W1610924167
LSZY01000566
Actinomycetota
Streptomyces scabiei [LSZY]
14231
14317
+
Ser
GCT
[ENA]
¡û
>W1710058911
BCMM01000007
Actinomycetota
Streptomyces scabiei [BCMM]
220909
220995
+
Ser
GCT
[ENA]
¡û
>W1710569953
FOUV01000013
Actinomycetota
Streptomyces sp. cf124 [FOUV]
227900
227986
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK