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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13318 (59 seq.)
>W1710859018
LMBV01000018
Bacillota
Peribacillus muralis [LMBV]
81929
81838
-
Ser
GGA
[ENA]
¡û
>W1710878982
LMRJ01000038
Bacillota
Bacillus sp. Leaf13 [LMRJ]
27892
27801
-
Ser
GGA
[ENA]
¡û
>W1710881255
LMSZ01000001
Bacillota
Bacillus sp. Soil745 [LMSZ]
5291
5382
+
Ser
GGA
[ENA]
¡û
>W1710881354
LMTA01000023
Bacillota
Bacillus sp. Soil768D1 [LMTA]
53443
53352
-
Ser
GGA
[ENA]
¡û
>W1710882643
LMVB01000001
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
2930573
2930482
-
Ser
GGA
[ENA]
¡û
>W1710885426
LMXG01000001
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
2930573
2930482
-
Ser
GGA
[ENA]
¡û
>W1710905515
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
30381
30290
-
Ser
GGA
[ENA]
¡û
>W1711130517
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1808397
1808306
-
Ser
GGA
[ENA]
¡û
>W1711130534
LUUS01000004
Bacillota
Peribacillus frigoritolerans [LUUS]
839
748
-
Ser
GGA
[ENA]
¡û
>W1711130676
LUUU01000002
Bacillota
Neobacillus drentensis [LUUU]
1069261
1069352
+
Ser
GGA
[ENA]
¡û
>W1711182080
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
4007608
4007517
-
Ser
GGA
[ENA]
¡û
>W1711182235
LWJJ01000093
Bacillota
Peribacillus simplex [LWJJ]
3812
3903
+
Ser
GGA
[ENA]
¡û
>W1711538824
MLYQ01000057
Bacillota
Bacillus sp. MUM 13 [MLYQ]
327
418
+
Ser
GGA
[ENA]
¡û
>W141022284
AJTN02000072
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
468
559
+
Ser
GGA
[ENA]
¡û
>WENV181671955
OGON01011718
[OGON] human gut metagenome; faeces
1701
1792
+
Ser
GGA
[ENA]
¢þ
>W141193437
AYSD01000037
Bacillota
Bacillus cihuensis FJAT-14515 [AYSD]
1086
995
-
Ser
GGA
[ENA]
¡û
>W141265262
CCFE01000025
Bacillota
Bacillus rubiinfantis MT2 [CCFE]
30371
30280
-
Ser
GGA
[ENA]
¡û
>C181027509
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
1823461
1823370
-
Ser
GGA
-
¡û
>C181194402
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
3215781
3215872
+
Ser
GGA
-
¡û
>C191040326
CP026095
Bacillota
Peribacillus asahii OM18 [CP026095]
730860
730951
+
Ser
GGA
-
¡û
>C191071815
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
2505082
2504991
-
Ser
GGA
-
¡û
>W1910549406
FZPG01000014
Bacillota
Bacillus sp. OK838 [FZPG]
194
285
+
Ser
GGA
[ENA]
¡û
>W1910755579
MKYS01000034
Bacillota
Peribacillus simplex 313 [MKYS]
378
469
+
Ser
GGA
[ENA]
¡û
>W1910871139
NCWW01000064
Bacillota
Peribacillus simplex OG2 [NCWW]
1069
1160
+
Ser
GGA
[ENA]
¡û
>W1911178004
NQLS01000302
Bacillota
Peribacillus simplex 7894 [NQLS]
90
181
+
Ser
GGA
[ENA]
¡û
>W1911298419
NTTZ01000008
Bacillota
Bacillus sp. AFS017274 [NTTZ]
118
209
+
Ser
GGA
[ENA]
¡û
>W1911311200
NUBA01000055
Bacillota
Bacillus sp. AFS026049 [NUBA]
42464
42373
-
Ser
GGA
[ENA]
¡û
>W1911317720
NUEQ01000026
Bacillota
Peribacillus butanolivorans AFS003229 [NUEQ]
118
209
+
Ser
GGA
[ENA]
¡û
>W1911343142
NUSS01000019
Bacillota
Bacillus sp. AFS043905 [NUSS]
110
201
+
Ser
GGA
[ENA]
¡û
>W1911381436
NVNR01000007
Bacillota
Bacillus sp. AFS094228 [NVNR]
110
201
+
Ser
GGA
[ENA]
¡û
>W1911405156
NWQJ01000064
Bacillota
Peribacillus simplex WY10 [NWQJ]
271
180
-
Ser
GGA
[ENA]
¡û
>W1911565861
PCOJ01000016
Bacillota
Peribacillus simplex MYb48 [PCOJ]
92011
91920
-
Ser
GGA
[ENA]
¡û
>W1810115809
PHNG01000469
Bacillota
Bacillus sp. mrc49 [PHNG]
503
594
+
Ser
GGA
[ENA]
¡û
>W1810115874
PHNG01000754
Bacillota
Bacillus sp. mrc49 [PHNG]
13019
12928
-
Ser
GGA
[ENA]
¡û
>W1810154740
PIZR01000002
Bacillota
Bacillus sp. BA3 [PIZR]
1439734
1439643
-
Ser
GGA
[ENA]
¡û
>W1810361180
PVQJ01000030
Bacillota
Bacillus sp. RJGP41 [PVQJ]
45411
45320
-
Ser
GGA
[ENA]
¡û
>W1510061067
CCXW01000001
Bacillota
Peribacillus simplex P558 [CCXW]
996498
996589
+
Ser
GGA
[ENA]
¡û
>W1510061084
CCXW01000001
Bacillota
Peribacillus simplex P558 [CCXW]
5253031
5252940
-
Ser
GGA
[ENA]
¡û
>W1511455494
JVGU01000225
Bacillota
Bacillus sp. 445_BSPC [JVGU]
54
145
+
Ser
GGA
[ENA]
¡û
>W1511464043
JVPL01000280
Bacillota
Bacillus sp. 220_BSPC [JVPL]
54
145
+
Ser
GGA
[ENA]
¡û
>W1511693515
LFZW01000001
Bacillota
Peribacillus loiseleuriae FJAT-27997 [LFZW]
1024255
1024346
+
Ser
GGA
[ENA]
¡û
>C161031036
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
857271
857362
+
Ser
GGA
[Ensembl]
¡û
>W1610029472
AXBR01000002
Bacillota
Peribacillus simplex BA2H3 [AXBR]
33256
33165
-
Ser
GGA
[ENA]
¡û
>W1610586267
LDGI01000003
Bacillota
Peribacillus muralis G25-68 [LDGI]
19098
19007
-
Ser
GGA
[ENA]
¡û
>W1610721364
LMBV01000018
Bacillota
Peribacillus muralis [LMBV]
81929
81838
-
Ser
GGA
[ENA]
¡û
>W1610741328
LMRJ01000038
Bacillota
Bacillus sp. Leaf13 [LMRJ]
27892
27801
-
Ser
GGA
[ENA]
¡û
>W1610743601
LMSZ01000001
Bacillota
Bacillus sp. Soil745 [LMSZ]
5291
5382
+
Ser
GGA
[ENA]
¡û
>W1610743700
LMTA01000023
Bacillota
Bacillus sp. Soil768D1 [LMTA]
53443
53352
-
Ser
GGA
[ENA]
¡û
>W1610744569
LMVB01000001
Bacillota
Paenibacillus sp. FJAT-29882 [LMVB]
2930573
2930482
-
Ser
GGA
[ENA]
¡û
>W1610747352
LMXG01000001
Bacillota
Bacillus sp. FJAT-28573 [LMXG]
2930573
2930482
-
Ser
GGA
[ENA]
¡û
>W1610764529
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
30381
30290
-
Ser
GGA
[ENA]
¡û
>W1610941590
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1808397
1808306
-
Ser
GGA
[ENA]
¡û
>W1610941607
LUUS01000004
Bacillota
Peribacillus frigoritolerans [LUUS]
839
748
-
Ser
GGA
[ENA]
¡û
>W1610941749
LUUU01000002
Bacillota
Neobacillus drentensis [LUUU]
1069261
1069352
+
Ser
GGA
[ENA]
¡û
>W1610989297
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
4007608
4007517
-
Ser
GGA
[ENA]
¡û
>W1610989452
LWJJ01000093
Bacillota
Peribacillus simplex [LWJJ]
3812
3903
+
Ser
GGA
[ENA]
¡û
>W1710026842
AXBR01000002
Bacillota
Peribacillus simplex BA2H3 [AXBR]
33256
33165
-
Ser
GGA
[ENA]
¡û
>W1710558632
FOMA01000014
Bacillota
Bacillus sp. OV322 [FOMA]
20564
20473
-
Ser
GGA
[ENA]
¡û
>W1710596988
FTMX01000002
Bacillota
Peribacillus simplex [FTMX]
989011
988920
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK