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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133296 (41 seq.)
>W131230058
AUHH01000019
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
75666
75585
-
Gln
TTG
[ENA]
¡û
>W1711334187
MBQD01000011
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
48409
48490
+
Pseudo
TTG
[ENA]
¡û
>W1711718001
MTHC01000002
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
243286
243207
-
Pseudo
TTG
[ENA]
¡û
>C171055664
CP017040
Actinomycetota
Cutibacterium modestum F0672 [CP017040]
800297
800215
-
Gln
TTG
-
¡û
>C171091510
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1031801
1031720
-
Gln
TTG
-
¡û
>C171096292
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
2426670
2426749
+
Gln
TTG
-
¡û
>WENV180285021
OBID01197461
[OBID] metagenome; sludge
324
245
-
Gln
TTG
[ENA]
¡û
>WENV170979384
MTKZ01088115
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1280
1199
-
Gln
TTG
[ENA]
¡û
>W1911570399
PCZR01000001
Actinomycetota
[Propionibacterium] humerusii T33958 [PCZR]
1201348
1201266
-
Gln
TTG
[ENA]
¡û
>W1911615590
PPCV01000002
Actinomycetota
Brevilactibacter flavus VG341 [PPCV]
279865
279946
+
Gln
TTG
[ENA]
¡û
>W2010091561
BJEN01000002
Actinomycetota
Cutibacterium sp. M12 [BJEN]
689927
690009
+
Gln
TTG
[ENA]
¡û
>W2010271920
CABKTT020000016
Actinomycetota
Tessaracoccus massiliensis [CABKTT]
250318
250239
-
Gln
TTG
[ENA]
¡û
>W2010521060
JAANIJ010000001
Actinomycetota
Tessaracoccus sp. HDW20 [JAANIJ]
1100824
1100744
-
Gln
TTG
[ENA]
¡û
>W2010739093
JACJFY010000001
Actinomycetota
Tessaracoccus sp. MC1865 [JACJFY]
218137
218057
-
Gln
TTG
[ENA]
¡û
>W2010739159
JACJFZ010000002
Actinomycetota
Tessaracoccus sp. MC1756 [JACJFZ]
451156
451077
-
Gln
TTG
[ENA]
¡û
>W2010739180
JACJGA010000001
Actinomycetota
Tessaracoccus sp. MC1627 [JACJGA]
977986
978065
+
Gln
TTG
[ENA]
¡û
>W2010739227
JACJGB010000001
Actinomycetota
Tessaracoccus sp. MC1679 [JACJGB]
100786
100703
-
Gln
TTG
[ENA]
¡û
>W2011182546
PCZR01000001
Actinomycetota
[Propionibacterium] humerusii T33958 [PCZR]
1201348
1201266
-
Gln
TTG
[ENA]
¡û
>W2011208531
PPCV01000002
Actinomycetota
Brevilactibacter flavus VG341 [PPCV]
279865
279946
+
Gln
TTG
[ENA]
¡û
>W2011686903
SRYP01000003
Actinomycetota
Propionibacterium sp. NM47_B9-13 [SRYP]
402917
402999
+
Gln
TTG
[ENA]
¡û
>W2011950972
UWOQ01000004
Actinomycetota
[Propionibacterium] humerusii Marseille-P5998 [UWOQ]
39362
39444
+
Gln
TTG
[ENA]
¡û
>C211026187
AP024747
Actinomycetota
Cutibacterium modestum KB17-24694 [AP024747]
599969
600051
+
Gln
TTG
-
¡û
>C211138922
CP060789
Actinomycetota
Tessaracoccus defluvii JCM 17540 [CP060789]
2101331
2101251
-
Gln
TTG
-
¡û
>C211310330
CP072596
Actinomycetota
Tessaracoccus sp. MC1865 [CP072596]
690751
690831
+
Gln
TTG
-
¡û
>C211409235
LR214441
Actinomycetota
Tessaracoccus lapidicaptus [LR214441]
1031804
1031724
-
Gln
TTG
-
¡û
>W1510061393
CCYJ01000016
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
250318
250239
-
Gln
TTG
[ENA]
¡û
>W10120999
ADXV01000014
Actinomycetota
Cutibacterium modestum HL037PA3 [ADXV]
15690
15772
+
Gln
TTG
[ENA]
¡û
>W10121571
ADYH01000048
Actinomycetota
Cutibacterium modestum HL037PA2 [ADYH]
21589
21507
-
Gln
TTG
[ENA]
¡û
>W10123295
ADZU01000013
Actinomycetota
Cutibacterium modestum HL044PA1 [ADZU]
21578
21496
-
Gln
TTG
[ENA]
¡û
>W2310006654
ALWL01000010
Actinomycetota
Cutibacterium modestum 28N [ALWL]
37175
37257
+
Gln
TTG
[ENA]
¡û
>W11127743
ADXV01000014
Actinomycetota
Cutibacterium modestum HL037PA3 [ADXV]
15690
15772
+
Gln
TTG
[ENA]
¡û
>W11128315
ADYH01000048
Actinomycetota
Cutibacterium modestum HL037PA2 [ADYH]
21589
21507
-
Gln
TTG
[ENA]
¡û
>W11130039
ADZU01000013
Actinomycetota
Cutibacterium modestum HL044PA1 [ADZU]
21578
21496
-
Gln
TTG
[ENA]
¡û
>W11155864
AFAM01000001
Actinomycetota
Cutibacterium modestum P08 [AFAM]
306601
306683
+
Gln
TTG
[ENA]
¡û
>W1610050493
BBFX01000319
Actinomycetota
Granulicoccus phenolivorans JCM 15570 [BBFX]
304
224
-
Pseudo
TTG
[ENA]
¡û
>W1610067999
BCQZ01000003
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
176364
176445
+
Gln
TTG
[ENA]
¡û
>W1611066154
MBQD01000011
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
48409
48490
+
Pseudo
TTG
[ENA]
¡û
>W1710046892
BBFX01000319
Actinomycetota
Granulicoccus phenolivorans JCM 15570 [BBFX]
304
224
-
Pseudo
TTG
[ENA]
¡û
>W1710065372
BCQZ01000003
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
176364
176445
+
Gln
TTG
[ENA]
¡û
>W1710521703
FNGP01000002
Actinomycetota
Tessaracoccus oleiagri [FNGP]
538762
538681
-
Gln
TTG
[ENA]
¡û
>W1710588336
FQZG01000037
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
38522
38441
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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