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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133321 (26 seq.)
>WENV181427178
OGCQ01041536
[OGCQ] human gut metagenome; human gut
549
630
+
Leu
TAG
[ENA]
¡û
>WENV182154306
OHLO01037912
[OHLO] human gut metagenome; feces
31
112
+
Leu
TAG
[ENA]
¡û
>WENV182511377
OIWK01059977
[OIWK] human gut metagenome; faeces
108
189
+
Leu
TAG
[ENA]
¡û
>WENV182732800
OJQB01030690
[OJQB] human gut metagenome; stool sample
39
120
+
Leu
TAG
[ENA]
¡û
>WENV183043375
OLGD01048875
[OLGD] human gut metagenome; faeces
347
428
+
Leu
TAG
[ENA]
¡û
>WENV183047822
OLGF01018065
[OLGF] human gut metagenome; faeces
1064
1145
+
Leu
TAG
[ENA]
¡û
>WENV183153046
OLOQ01031425
[OLOQ] human gut metagenome; faeces
927
1008
+
Leu
TAG
[ENA]
¡û
>WENV183251338
OLRH01039055
[OLRH] human gut metagenome; faeces
937
1018
+
Leu
TAG
[ENA]
¡û
>WENV170028002
CDTY01053248
[CDTY] gut metagenome; human stools
4805
4886
+
Leu
TAG
[ENA]
¡û
>C181115585
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1122118
1122037
-
Leu
TAG
-
¡û
>C191031588
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1087292
1087211
-
Leu
TAG
-
¡û
>C191031643
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1122116
1122035
-
Leu
TAG
-
¡û
>C191072254
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1122114
1122033
-
Leu
TAG
-
¡û
>W1810816723
QSBX01000003
Bacillota
Anaerotruncus sp. AF02-27 [QSBX]
201080
201161
+
Leu
TAG
[ENA]
¡û
>W2010253681
CABJAH020000003
Bacillota
Anaerotruncus rubiinfantis [CABJAH]
105439
105520
+
Leu
TAG
[ENA]
¡û
>W2110243759
JACONZ010000001
Bacillota
Anaerofilum sp. BX8 [JACONZ]
587957
588038
+
Leu
TAG
[ENA]
¡û
>W2110248049
JACRTB010000008
Bacillota
Oscillospiraceae bacterium BX1 [JACRTB]
145260
145179
-
Leu
TAG
[ENA]
¡û
>W2110348496
JADNCI010000002
Bacillota
Anaerotruncus rubiinfantis 1001713B170131_170501_D12 [JADNCI]
104278
104359
+
Leu
TAG
[ENA]
¡û
>W2110348753
JADNCT010000005
Bacillota
Anaerotruncus rubiinfantis D41t1_190614_H2 [JADNCT]
105617
105698
+
Leu
TAG
[ENA]
¡û
>W10115284
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
121628
121709
+
Leu
TAG
[ENA]
¡û
>W2310017265
BQNU01000001
Bacillota
Eubacteriales bacterium CE91-St46 [BQNU]
2399991
2400072
+
Leu
TAG
[ENA]
¡û
>C11108781
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1122115
1122034
-
Leu
TAG
[Ensembl]
¡û
>W11118870
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
121628
121709
+
Leu
TAG
[ENA]
¡û
>W1610461265
FKLA01000009
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
71630
71549
-
Leu
TAG
[ENA]
¡û
>W1710460539
FKLA01000009
Bacillota
Anaerotruncus rubiinfantis MT15 [FKLA]
71630
71549
-
Leu
TAG
[ENA]
¡û
>W1710565690
FORK01000007
Bacillota
Ruminococcaceae bacterium D5 [FORK]
16265
16184
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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