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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133377 (26 seq.)
>W1711010832
LQRT01000046
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
371121
371046
-
Pro
GGG
[ENA]
¡û
>W131066922
ANPJ01000005
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
88179
88104
-
Pro
GGG
[ENA]
¡û
>W131236525
AUMK01000021
Bacteroidota
Aquimarina latercula DSM 2041 [AUMK]
45803
45880
+
Pro
GGG
[ENA]
¡û
>w013049
AAMZ01000007
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
117467
117393
-
Pro
GGG
[ENA]
¡û
>WENV182546616
OJBP01000492
[OJBP] seawater metagenome; Sea water
9715
9790
+
Pro
GGG
[ENA]
¢þ
>W141274950
JACC01000040
Bacteroidota
Aquimarina pacifica SW150 [JACC]
12833
12756
-
Pro
GGG
[ENA]
¡û
>WENV170290190
CERZ01011589
[CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
343
268
-
Pro
GGG
[ENA]
¢þ
>C181175176
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
1003155
1003230
+
Pro
GGG
-
¡û
>C191083537
CP031965
Bacteroidota
Aquimarina sp. AD10 [CP031965]
1989322
1989247
-
Pro
GGG
-
¡û
>C191083538
CP031966
Bacteroidota
Aquimarina sp. AD1 [CP031966]
571528
571603
+
Pro
GGG
-
¡û
>W1910796639
MSCN01000001
Bacteroidota
Polaribacter porphyrae NBRC 108759 [MSCN]
1806145
1806220
+
Pro
GGG
[ENA]
¡û
>W1911535370
OMKA01000003
Bacteroidota
Aquimarina sp. Aq78 [OMKA]
463619
463544
-
Pro
GGG
[ENA]
¡û
>W1911535485
OMKC01000018
Bacteroidota
Aquimarina sp. Aq107 [OMKC]
72281
72356
+
Pro
GGG
[ENA]
¡û
>W1911535519
OMKE01000058
Bacteroidota
Aquimarina sp. Aq135 [OMKE]
25635
25710
+
Pro
GGG
[ENA]
¡û
>W1911535531
OMKF01000012
Bacteroidota
Aquimarina sp. Aq78 [OMKF]
7031
7106
+
Pro
GGG
[ENA]
¡û
>W1911538884
OMPE01000007
Bacteroidota
Aquimarina sp. AU474 [OMPE]
456551
456476
-
Pro
GGG
[ENA]
¡û
>W1911538931
OMPF01000024
Bacteroidota
Aquimarina sp. AU119 [OMPF]
342652
342577
-
Pro
GGG
[ENA]
¡û
>W1810102137
PGUB01000129
Bacteroidota
Aquimarina sp. I32.4 [PGUB]
2912
2987
+
Pro
GGG
[ENA]
¡û
>W1810228507
POYJ01000004
Bacteroidota
Aquimarina sediminis w01 [POYJ]
131845
131770
-
Pro
GGG
[ENA]
¡û
>W1810756022
QPEJ01000016
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
414000
414075
+
Pro
GGG
[ENA]
¡û
>C151048582
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
2450782
2450705
-
Pro
GGG
[Ensembl]
¡û
>C11111623
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
1674656
1674581
-
Pro
GGG
[Ensembl]
¡û
>W1511360742
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
2345006
2344931
-
Pro
GGG
[ENA]
¡û
>C161083540
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
1103598
1103523
-
Pro
GGG
-
¡û
>W1610859308
LQRT01000046
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
371121
371046
-
Pro
GGG
[ENA]
¡û
>W1710543574
FOAB01000013
Bacteroidota
Aquimarina amphilecti [FOAB]
64577
64654
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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