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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13341 (69 seq.)
>W1710909535
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1711234530
LYCQ01000315
Actinomycetota
Nocardia farcinica [LYCQ]
51379
51288
-
Ser
GCT
[ENA]
¡û
>W1711281599
LZMI01000001
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
64195
64286
+
Ser
GCT
[ENA]
¡û
>W1711281924
LZMO01000270
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
23816
23907
+
Ser
GCT
[ENA]
¡û
>W1711281956
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101357
101266
-
Ser
GCT
[ENA]
¡û
>W1711286452
LZTC01000020
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
12599
12508
-
Ser
GCT
[ENA]
¡û
>W1711286519
LZTD01000093
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
46320
46229
-
Ser
GCT
[ENA]
¡û
>W1711286543
LZTE01000025
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
104986
105077
+
Ser
GCT
[ENA]
¡û
>W1711460540
MJEI01000053
Actinomycetota
Williamsia sp. 1135 [MJEI]
1374
1283
-
Ser
GCT
[ENA]
¡û
>W1711460602
MJEJ01000037
Actinomycetota
Williamsia sp. 1138 [MJEJ]
163518
163609
+
Ser
GCT
[ENA]
¡û
>W1711492284
MKKG01000033
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
45189
45280
+
Ser
GCT
[ENA]
¡û
>W1711776892
MVKV01000001
Actinomycetota
Gordonia sp. IITR100 [MVKV]
507366
507275
-
Ser
GCT
[ENA]
¡û
>W1711784487
MVPX01000040
Actinomycetota
Gordonia sp. i37 [MVPX]
7351
7442
+
Ser
GCT
[ENA]
¡û
>W1712061681
NGFO01000001
Actinomycetota
Gordonia lacunae [NGFO]
179060
179151
+
Ser
GCT
[ENA]
¡û
>W131109075
APHK01000045
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
3629
3720
+
Ser
GCT
[ENA]
¡û
>W131156561
AQPW01000016
Actinomycetota
Gordonia terrae C-6 [AQPW]
59342
59433
+
Ser
GCT
[ENA]
¡û
>W131185138
ARTM01000032
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
259360
259451
+
Ser
GCT
[ENA]
¡û
>W131186263
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
6121415
6121506
+
Ser
GCT
[ENA]
¡û
>W131239457
BANR01000026
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
73880
73971
+
Ser
GCT
[ENA]
¡û
>W131239509
BANS01000063
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
14668
14759
+
Ser
GCT
[ENA]
¡û
>W131239690
BANX01000009
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
20131
20040
-
Ser
GCT
[ENA]
¡û
>W131240916
BAOQ01000028
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
79420
79329
-
Ser
GCT
[ENA]
¡û
>W141144178
AWTB01000033
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
51077
50986
-
Ser
GCT
[ENA]
¡û
>W141200035
AYXO01000009
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
173111
173202
+
Ser
GCT
[ENA]
¡û
>W141256047
CBVP010000185
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
4950
5041
+
Ser
GCT
[ENA]
¡û
>WENV170566306
FKKE01014784
[FKKE] freshwater metagenome; freshwater
8785
8694
-
Ser
GCT
[ENA]
¢þ
>C191020762
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
284132
284223
+
Ser
GCT
-
¡û
>C191050831
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
716988
716897
-
Ser
GCT
-
¡û
>C191117148
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
3620010
3619920
-
Ser
GCT
-
¡û
>W09109086
ABTV01000012
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
92289
92378
+
Ser
GCT
[ENA]
¡û
>W1920000203
FVPM01000130
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
9424
9333
-
Ser
GCT
[ENA]
¡û
>W1910611738
LFLR01000014
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
15705
15615
-
Ser
GCT
[ENA]
¡û
>W1911180197
NQOE01000001
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
3494367
3494277
-
Ser
GCT
[ENA]
¡û
>W1810658300
QJJF01000007
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
160121
160212
+
Ser
GCT
[ENA]
¡û
>W1810671210
QJSP01000023
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
35138
35229
+
Ser
GCT
[ENA]
¡û
>ENV09003890
ADGO01204418
Compost metagenome contig00001
126
35
-
Ser
GCT
[ENA]
¡û
>C10107049
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
335164
335253
+
Ser
GCT
[Ensembl]
¡û
>W1511640310
LDTZ01000020
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
37654
37563
-
Ser
GCT
[ENA]
¡û
>W11184678
BACI01000056
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
17181
17090
-
Ser
GCT
[ENA]
¡û
>C121006216
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
5386448
5386357
-
Ser
GCT
[Ensembl]
¡û
>W1610050710
BBGD01000326
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
2294
2203
-
Ser
GCT
[ENA]
¡û
>W1610051026
BBGK01000155
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
671
580
-
Ser
GCT
[ENA]
¡û
>W1610051122
BBGN01000895
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
655
564
-
Ser
GCT
[ENA]
¡û
>W1610062162
BCNF01000116
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
12362
12271
-
Ser
GCT
[ENA]
¡û
>W121123913
BAEI01000075
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
120952
120861
-
Ser
GCT
[ENA]
¡û
>W121124265
BAFB01000001
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
8716
8625
-
Ser
GCT
[ENA]
¡û
>W121124343
BAFC01000116
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
70560
70469
-
Ser
GCT
[ENA]
¡û
>W121126541
BAHB01000066
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
19562
19471
-
Ser
GCT
[ENA]
¡û
>W121126594
BAHC01000151
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
21200
21109
-
Ser
GCT
[ENA]
¡û
>W121126692
BAHE01000020
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
126283
126374
+
Ser
GCT
[ENA]
¡û
>W121123868
BAEH01000106
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
91615
91524
-
Ser
GCT
[ENA]
¡û
>C131001558
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
342971
343062
+
Ser
GCT
[Ensembl]
¡û
>W1610515303
FMAX01000005
Actinomycetota
Gordonia sp. v-85 [FMAX]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1610638769
LIYC01000019
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
71803
71712
-
Ser
GCT
[ENA]
¡û
>W1610767894
LNQO01000005
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1611040884
LZMI01000001
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
64195
64286
+
Ser
GCT
[ENA]
¡û
>W1611041209
LZMO01000270
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
23816
23907
+
Ser
GCT
[ENA]
¡û
>W1611041241
LZMP01000024
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
101357
101266
-
Ser
GCT
[ENA]
¡û
>W1611044013
LZTC01000020
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
12599
12508
-
Ser
GCT
[ENA]
¡û
>W1611044080
LZTD01000093
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
46320
46229
-
Ser
GCT
[ENA]
¡û
>W1611044104
LZTE01000025
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
104986
105077
+
Ser
GCT
[ENA]
¡û
>W1710047109
BBGD01000326
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
2294
2203
-
Ser
GCT
[ENA]
¡û
>W1710047425
BBGK01000155
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
671
580
-
Ser
GCT
[ENA]
¡û
>W1710047521
BBGN01000895
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
655
564
-
Ser
GCT
[ENA]
¡û
>W1710059703
BCNF01000116
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
12362
12271
-
Ser
GCT
[ENA]
¡û
>W1710500993
FMAX01000005
Actinomycetota
Gordonia sp. v-85 [FMAX]
130779
130870
+
Ser
GCT
[ENA]
¡û
>W1710527899
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
3672574
3672483
-
Ser
GCT
[ENA]
¡û
>W1710598119
FTNT01000005
Actinomycetota
Williamsia sterculiae [FTNT]
34554
34643
+
Ser
GCT
[ENA]
¡û
>W1710774600
LIYC01000019
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
71803
71712
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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