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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133569 (52 seq.)
>A171000455
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
1777896
1777822
-
Arg
TCG
-
¡û
>A171002729
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
961322
961248
-
Arg
TCG
-
¡û
>A171004132
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
984813
984887
+
Arg
TCG
-
¡û
>A171006866
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2906575
2906501
-
Arg
TCG
-
¡û
>A171006986
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
688829
688755
-
Arg
TCG
-
¡û
>A171007146
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
1098359
1098433
+
Arg
TCG
-
¡û
>WENV180318329
OBKM01000417
[OBKM] metagenome; water
76
2
-
Arg
TCG
[ENA]
¢þ
>WENV180318710
OBKM01006024
[OBKM] metagenome; water
2823
2749
-
Arg
TCG
[ENA]
¢þ
>WENV180318928
OBKM01048643
[OBKM] metagenome; water
255
329
+
Arg
TCG
[ENA]
¢þ
>WENV181404283
OGBZ01010613
[OGBZ] sediment metagenome; hot spring sediment
365
290
-
Arg
TCG
[ENA]
¢þ
>WENV170008709
APHM01002492
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1085
1011
-
Arg
TCG
[ENA]
¢þ
>WENV170009157
APHM01021477
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
5515
5441
-
Arg
TCG
[ENA]
¢þ
>At0849
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
1078863
1078937
+
Arg
TCG
[Ensembl]
¡û
>WENV170660054
JXWS01117013
[JXWS] soil metagenome; rice field; elevated CO2
551
476
-
Arg
TCG
[ENA]
¢þ
>WENV170681220
LFFM01000212
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1849
1772
-
Arg
TCG
[ENA]
¢þ
>WENV170681394
LFFM01000718
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4884
4958
+
Arg
TCG
[ENA]
¢þ
>WENV170681541
LFFM01001293
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1844
1770
-
Arg
TCG
[ENA]
¢þ
>WENV170702799
LKMJ01004193
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12054
12128
+
Arg
TCG
[ENA]
¢þ
>WENV170702879
LKMJ01004453
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13133
13056
-
Arg
TCG
[ENA]
¢þ
>WENV170703662
LKMJ01015088
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6847
6921
+
Arg
TCG
[ENA]
¢þ
>WENV170703982
LKMJ01020253
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3317
3243
-
Arg
TCG
[ENA]
¢þ
>W1910006755
BBJP01000022
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
13372
13298
-
Arg
TCG
[ENA]
¡û
>W1910229304
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
366985
367059
+
Arg
TCG
[ENA]
¡û
>W1910229942
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
352555
352481
-
Arg
TCG
[ENA]
¡û
>W1910230854
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
809730
809805
+
Arg
TCG
[ENA]
¡û
>W1910340486
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
363458
363532
+
Arg
TCG
[ENA]
¡û
>W1910572563
JMIP02000015
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
39240
39314
+
Arg
TCG
[ENA]
¡û
>W1910572755
JNFH02000037
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
20062
20136
+
Arg
TCG
[ENA]
¡û
>W1910574987
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
586947
586873
-
Arg
TCG
[ENA]
¡û
>W1910749510
MJCD01000014
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
70049
70123
+
Arg
TCG
[ENA]
¡û
>W1910752241
MKFG01000002
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
372598
372672
+
Arg
TCG
[ENA]
¡û
>W1910826083
MWPH01000001
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
959588
959663
+
Arg
TCG
[ENA]
¡û
>W1910911734
NHOA01000052
Euryarchaeota
Halorubrum persicum C49 [NHOA]
13201
13275
+
Arg
TCG
[ENA]
¡û
>W1910912043
NHOX01000024
Euryarchaeota
Halorubrum sp. Ib24 [NHOX]
123980
124054
+
Arg
TCG
[ENA]
¡û
>W1910912103
NHOY01000124
Euryarchaeota
Halorubrum sp. Hd13 [NHOY]
9735
9809
+
Arg
TCG
[ENA]
¡û
>W1910912389
NHPG01000022
Euryarchaeota
Halorubrum sp. Ea1 [NHPG]
10162
10236
+
Arg
TCG
[ENA]
¡û
>W1910912484
NHPI01002636
Euryarchaeota
Halorubrum sp. E3 [NHPI]
93
167
+
Arg
TCG
[ENA]
¡û
>W1911693755
QLVG01000047
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
5830
5904
+
Arg
TCG
[ENA]
¡û
>W1911709868
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
830822
830748
-
Arg
TCG
[ENA]
¡û
>W1911710006
QPND01000036
Euryarchaeota
Saliphagus sp. LR7 [QPND]
4352
4278
-
Arg
TCG
[ENA]
¡û
>W1911749395
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
345603
345529
-
Arg
TCG
[ENA]
¡û
>W1610012703
AOIS01000010
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
52298
52372
+
Arg
TCG
[ENA]
¡û
>W1610012830
AOIU01000036
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
51331
51405
+
Arg
TCG
[ENA]
¡û
>W1610013013
AOJE01000070
Euryarchaeota
Halorubrum saccharovorum DSM 1137 [AOJE]
312513
312587
+
Arg
TCG
[ENA]
¡û
>W1610013065
AOJG01000007
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
105542
105468
-
Arg
TCG
[ENA]
¡û
>W1610019089
ARPX01000162
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
155768
155842
+
Arg
TCG
[ENA]
¡û
>W1610046856
BBCV01000026
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
1475
1400
-
Arg
TCG
[ENA]
¡û
>W1610082996
CBMA010000048
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
79211
79137
-
Arg
TCG
[ENA]
¡û
>W1610671376
LKCV01000095
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
4721
4647
-
Arg
TCG
[ENA]
¡û
>W1610682299
LKMR01000096
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
6847
6921
+
Arg
TCG
[ENA]
¡û
>W1610682529
LKNC01000004
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
4884
4958
+
Arg
TCG
[ENA]
¡û
>W1610682620
LKNF01000027
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
1844
1770
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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