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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133582 (110 seq.)
>W1710865627
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1625635
1625554
-
Gln
TTG
[ENA]
¡û
>W1710874063
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
228958
229037
+
Gln
TTG
[ENA]
¡û
>W1710879971
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
849651
849572
-
Gln
TTG
[ENA]
¡û
>W1710881069
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1118432
1118353
-
Gln
TTG
[ENA]
¡û
>W1711126724
LUPF01000090
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
20052
20133
+
Gln
TTG
[ENA]
¡û
>W1711126777
LUPH01000090
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
7560
7641
+
Gln
TTG
[ENA]
¡û
>W1711126866
LUPJ01000205
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
8562
8481
-
Gln
TTG
[ENA]
¡û
>W1711127055
LUPO01000023
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
20330
20411
+
Gln
TTG
[ENA]
¡û
>W1711127098
LUPP01000057
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
15947
15866
-
Gln
TTG
[ENA]
¡û
>W1712084133
NHQT01000009
Actinomycetota
Nocardioides sp. XL1 [NHQT]
124708
124629
-
Gln
TTG
[ENA]
¡û
>W131229374
AUGT01000008
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
64545
64464
-
Gln
TTG
[ENA]
¡û
>WENV180000062
CZKB01000004
[CZKB] metagenome; liquid mineral medium
358378
358297
-
Gln
TTG
[ENA]
¡û
>WENV180030976
FTJN01819717
[FTJN] metagenome; soil
407
328
-
Gln
TTG
[ENA]
¡û
>W141039279
ALWX01000003
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
45576
45495
-
Gln
TTG
[ENA]
¡û
>WENV180690157
OCZS010000099
[OCZS] soil metagenome; soil
20138
20059
-
Gln
TTG
[ENA]
¡û
>WENV180690377
OCZS010004520
[OCZS] soil metagenome; soil
1298
1219
-
Gln
TTG
[ENA]
¡û
>WENV181189513
OEOF01067764
[OEOF] activated sludge metagenome; Activated Sludge
215
294
+
Gln
TTG
[ENA]
¡û
>WENV181311670
OFJB01007830
[OFJB] sludge metagenome; sludge
2335
2414
+
Gln
TTG
[ENA]
¡û
>WENV170229548
CEQG01131105
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
968
887
-
Gln
TTG
[ENA]
¡û
>WENV170552181
CXWJ01043350
[CXWJ] wastewater metagenome; activated sludge
2280
2359
+
Gln
TTG
[ENA]
¡û
>WENV170552211
CXWJ01046732
[CXWJ] wastewater metagenome; activated sludge
5094
5173
+
Gln
TTG
[ENA]
¡û
>WENV170552341
CXWJ01056975
[CXWJ] wastewater metagenome; activated sludge
1169
1088
-
Gln
TTG
[ENA]
¡û
>WENV170726108
LSQX01368194
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
262
182
-
Gln
TTG
[ENA]
¡û
>WENV170728660
LULF01000076
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
20330
20411
+
Gln
TTG
[ENA]
¡û
>WENV170730677
LULH01001369
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
4530
4611
+
Gln
TTG
[ENA]
¡û
>WENV170731567
LULI01001031
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
10313
10394
+
Gln
TTG
[ENA]
¡û
>WENV170735173
LULL01000145
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
20152
20233
+
Gln
TTG
[ENA]
¡û
>WENV170737466
LULO01000181
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
20052
20133
+
Gln
TTG
[ENA]
¡û
>WENV170739319
LULQ01000237
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
7560
7641
+
Gln
TTG
[ENA]
¡û
>WENV170739886
LULQ01026976
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
407
328
-
Gln
TTG
[ENA]
¡û
>WENV170741820
LULT01006820
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
1882
1801
-
Gln
TTG
[ENA]
¡û
>WENV170743495
LULW01000236
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
20052
20133
+
Gln
TTG
[ENA]
¡û
>WENV170744191
LULW01035647
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
318
239
-
Gln
TTG
[ENA]
¡û
>WENV170747499
LUMC01009677
[LUMC] marine metagenome; Red Sea water column Station 91 - depth 10m
392
473
+
Gln
TTG
[ENA]
¡û
>WENV170758861
LUMS01000085
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
17877
17958
+
Gln
TTG
[ENA]
¡û
>WENV170760564
LUMT01025383
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
89
170
+
Gln
TTG
[ENA]
¡û
>WENV170760775
LUMU01000113
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
38786
38867
+
Gln
TTG
[ENA]
¡û
>C191104184
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
736295
736374
+
Gln
TTG
-
¡û
>C191132675
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
676696
676775
+
Gln
TTG
-
¡û
>C191159901
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
776159
776238
+
Gln
TTG
-
¡û
>W141564518
JIAV01000015
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
46422
46343
-
Gln
TTG
[ENA]
¡û
>W1911584623
PIPF01000003
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
177897
177816
-
Gln
TTG
[ENA]
¡û
>W1911768173
QXGH01000044
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
54036
54117
+
Gln
TTG
[ENA]
¡û
>W1911823566
QZVR01000009
Actinomycetota
Nocardioides sp. SZ4R5S7 [QZVR]
149708
149628
-
Gln
TTG
[ENA]
¡û
>W2010668201
JACBZI010000001
Actinomycetota
Nocardioides marinus DSM 18248 [JACBZI]
606619
606700
+
Gln
TTG
[ENA]
¡û
>W2010669173
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
2695872
2695791
-
Gln
TTG
[ENA]
¡û
>W2010681854
JACEHF010000280
Actinomycetota
Nocardioides pelophilus CGMCC 4.7388 [JACEHF]
726
647
-
Gln
TTG
[ENA]
¡û
>W2010682148
JACEIC010000002
Actinomycetota
Nocardioides sp. CGMCC 1.13656 [JACEIC]
1359205
1359126
-
Gln
TTG
[ENA]
¡û
>W2010744203
JACKXE010000001
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
1461414
1461335
-
Gln
TTG
[ENA]
¡û
>W2011325768
QXGH01000044
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
54036
54117
+
Gln
TTG
[ENA]
¡û
>W2011350556
QZVR01000009
Actinomycetota
Nocardioides sp. SZ4R5S7 [QZVR]
149708
149628
-
Gln
TTG
[ENA]
¡û
>W2011440453
RJSF01000047
Actinomycetota
Marmoricola pocheonensis Gsoil 818 [RJSF]
46965
46884
-
Gln
TTG
[ENA]
¡û
>W2011528909
SAYL01000001
Actinomycetota
Nocardioides sp. HY057 [SAYL]
419007
419086
+
Gln
TTG
[ENA]
¡û
>W2011546739
SDKM01000016
Actinomycetota
Nocardioides sp. 130 [SDKM]
63600
63679
+
Gln
TTG
[ENA]
¡û
>W2011675925
SPUI01000004
Actinomycetota
Nocardioides sp. 503 [SPUI]
652407
652486
+
Gln
TTG
[ENA]
¡û
>W2011694941
STGL01000003
Actinomycetota
Nocardioides sp. GY 10127 [STGL]
580518
580439
-
Gln
TTG
[ENA]
¡û
>W2011993074
VDUX01000002
Actinomycetota
Aeromicrobium sp. CC-CFT486 [VDUX]
325647
325566
-
Gln
TTG
[ENA]
¡û
>W2012093527
VMSC01000001
Actinomycetota
Nocardioides sp. SAI-095 HBUM178932 SAI-095 [VMSC]
5035173
5035252
+
Gln
TTG
[ENA]
¡û
>W2012152184
VUJW01000003
Actinomycetota
Nocardioides sp. BN140041 [VUJW]
369686
369607
-
Gln
TTG
[ENA]
¡û
>W2012341353
WITM01000001
Actinomycetota
Nocardioides sp. dk4132 [WITM]
518047
518126
+
Gln
TTG
[ENA]
¡û
>W2012369159
WLCI01000003
Actinomycetota
Nocardioides sp. zg-579 [WLCI]
204860
204939
+
Gln
TTG
[ENA]
¡û
>W2012434000
WTFS01000001
Actinomycetota
Nocardioides sp. ZJ1307 [WTFS]
991828
991907
+
Gln
TTG
[ENA]
¡û
>W2110031980
BMMR01000001
Actinomycetota
Nocardioides deserti CGMCC 4.7183 [BMMR]
1418229
1418150
-
Gln
TTG
[ENA]
¡û
>W2110037158
BMQT01000003
Actinomycetota
Nocardioides albus JCM 3185 [BMQT]
457025
456946
-
Gln
TTG
[ENA]
¡û
>W2110266337
JACUWQ010000011
Actinomycetota
Nocardioides sp. zg-578 [JACUWQ]
93668
93747
+
Gln
TTG
[ENA]
¡û
>W2110303540
JADCLL010000001
Actinomycetota
Nocardioides kribbensis DSM 16314 [JADCLL]
1001203
1001124
-
Gln
TTG
[ENA]
¡û
>W2110319766
JADHZD010000003
Actinomycetota
Nocardioides sp. JXJ CY 38 [JADHZD]
295618
295537
-
Gln
TTG
[ENA]
¡û
>W2110326514
JADIVZ010000001
Actinomycetota
Nocardioides acrostichi CBS4Y-1 [JADIVZ]
201109
201189
+
Gln
TTG
[ENA]
¡û
>W2110482101
JAFEJG010000004
Actinomycetota
Janibacter sp. YIM B02568 [JAFEJG]
2787694
2787613
-
Gln
TTG
[ENA]
¡û
>W2110516116
JAFMSX010000001
Actinomycetota
Nocardioides sp. SYSU D00065 [JAFMSX]
1084124
1084045
-
Gln
TTG
[ENA]
¡û
>W2110695100
JAIQZJ010000009
Actinomycetota
Nocardioides sp. GBK3QG-3 [JAIQZJ]
117643
117722
+
Gln
TTG
[ENA]
¡û
>C201266400
CP053660
Actinomycetota
Nocardioides sp. zg-579 [CP053660]
916587
916666
+
Gln
TTG
-
¡û
>C231319151
CP092535
Actinomycetota
Nocardioides sp. TF02-7 [CP092535]
2780968
2781046
+
Gln
TTG
-
¡û
>C241059443
CP041692
Actinomycetota
Microlunatus elymi KUDC0627 [CP041692]
4494267
4494188
-
Gln
TTG
-
¡û
>C241105811
CP046122
Actinomycetota
Microlunatus sp. Gsoil 973 [CP046122]
2731258
2731179
-
Gln
TTG
-
¡û
>C241176417
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
726645
726564
-
Gln
TTG
-
¡û
>C241176434
CP059164
Actinomycetota
Nocardioides ungokensis LMG 28591 [CP059164]
989492
989571
+
Gln
TTG
-
¡û
>C241205172
CP107970
Actinomycetota
Nocardioides sp. NBC_00368 [CP107970]
5423897
5423976
+
Gln
TTG
-
¡û
>C241221113
CP113431
Actinomycetota
Nocardioides sp. Arc9.136 [CP113431]
962754
962833
+
Gln
TTG
-
¡û
>W2310021987
BSEL01000005
Actinomycetota
Nocardioides luteus VKM Ac-1246 [BSEL]
348362
348281
-
Gln
TTG
[ENA]
¡û
>W11125300
ADVI01000061
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
104488
104567
+
Gln
TTG
[ENA]
¡û
>C161082899
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
386153
386072
-
Gln
TTG
[Ensembl]
¡û
>W1610027121
AVPJ01000005
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
16946
17025
+
Gln
TTG
[ENA]
¡û
>W1610027218
AVPL01000036
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
32325
32246
-
Gln
TTG
[ENA]
¡û
>W1610051251
BBGR01000595
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
696
775
+
Gln
TTG
[ENA]
¡û
>W1610068497
BCRJ01000076
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5379
5460
+
Gln
TTG
[ENA]
¡û
>W1610069722
BCSS01000019
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
33851
33770
-
Gln
TTG
[ENA]
¡û
>W1610072278
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
168818
168897
+
Gln
TTG
[ENA]
¡û
>W1610723151
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
855105
855186
+
Gln
TTG
[ENA]
¡û
>W1610724055
LMDV01000008
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
567118
567197
+
Gln
TTG
[ENA]
¡û
>W1610727973
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
1625635
1625554
-
Gln
TTG
[ENA]
¡û
>W1610736409
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
228958
229037
+
Gln
TTG
[ENA]
¡û
>W1610742317
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
849651
849572
-
Gln
TTG
[ENA]
¡û
>W1610743038
LMSN01000007
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
22923
22844
-
Gln
TTG
[ENA]
¡û
>W1610743415
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1118432
1118353
-
Gln
TTG
[ENA]
¡û
>W1610937838
LUPF01000090
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
20052
20133
+
Gln
TTG
[ENA]
¡û
>W1610937891
LUPH01000090
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
7560
7641
+
Gln
TTG
[ENA]
¡û
>W1610937926
LUPI01000023
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
20052
20133
+
Gln
TTG
[ENA]
¡û
>W1610937980
LUPJ01000205
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
8562
8481
-
Gln
TTG
[ENA]
¡û
>W1610938169
LUPO01000023
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
20330
20411
+
Gln
TTG
[ENA]
¡û
>W1610938212
LUPP01000057
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
15947
15866
-
Gln
TTG
[ENA]
¡û
>W1710023286
AVPJ01000005
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
16946
17025
+
Gln
TTG
[ENA]
¡û
>W1710023383
AVPL01000036
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
32325
32246
-
Gln
TTG
[ENA]
¡û
>W1710047650
BBGR01000595
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
696
775
+
Gln
TTG
[ENA]
¡û
>W1710065870
BCRJ01000076
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5379
5460
+
Gln
TTG
[ENA]
¡û
>W1710067095
BCSS01000019
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
33851
33770
-
Gln
TTG
[ENA]
¡û
>W1710069480
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
168818
168897
+
Gln
TTG
[ENA]
¡û
>W1710083344
BDJG01000056
Actinomycetota
Nocardioides sp. PD653 [BDJG]
7782
7703
-
Gln
TTG
[ENA]
¡û
>W1710512545
FMZM01000009
Actinomycetota
Nocardioides lianchengensis [FMZM]
84861
84780
-
Gln
TTG
[ENA]
¡û
>W1710550140
FOFA01000007
Actinomycetota
Microlunatus flavus flava [FOFA]
64439
64518
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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