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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13422 (104 seq.)
>W1711066590
LSCZ01000005
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
72081
72172
+
Ser
GCT
[ENA]
¡û
>W1711080556
LSRB01000082
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
62479
62388
-
Ser
GCT
[ENA]
¡û
>W1711092372
LTEB01000009
Actinomycetota
Corynebacterium simulans [LTEB]
67736
67827
+
Ser
GCT
[ENA]
¡û
>W1711093761
LTFH01000038
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
57480
57389
-
Ser
GCT
[ENA]
¡û
>W1711094333
LTFV01000039
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
15281
15190
-
Ser
GCT
[ENA]
¡û
>W1711094369
LTFW01000034
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
66488
66579
+
Ser
GCT
[ENA]
¡û
>W1711094431
LTFX01000035
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
67691
67782
+
Ser
GCT
[ENA]
¡û
>W1711094951
LTGK01000042
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
17875
17784
-
Ser
GCT
[ENA]
¡û
>W1711095289
LTGR01000021
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
82083
81992
-
Ser
GCT
[ENA]
¡û
>W1711096016
LTHJ01000056
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
78739
78830
+
Ser
GCT
[ENA]
¡û
>W1711096418
LTHS01000055
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
72072
72163
+
Ser
GCT
[ENA]
¡û
>W1711096787
LTIB01000018
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
4399
4308
-
Ser
GCT
[ENA]
¡û
>W1711097236
LTIM01000027
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
2553
2462
-
Ser
GCT
[ENA]
¡û
>W1711098674
LTJU01000055
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
75554
75645
+
Ser
GCT
[ENA]
¡û
>W1711098998
LTKC01000060
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
21467
21376
-
Ser
GCT
[ENA]
¡û
>W1711099158
LTKF01000113
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
8624
8533
-
Ser
GCT
[ENA]
¡û
>W1711099745
LTKS01000089
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
81836
81927
+
Ser
GCT
[ENA]
¡û
>W1711099781
LTKT01000043
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
9147
9238
+
Ser
GCT
[ENA]
¡û
>W1711106017
LTRK01000032
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
5138
5229
+
Ser
GCT
[ENA]
¡û
>W1711106078
LTRL01000041
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
202035
202126
+
Ser
GCT
[ENA]
¡û
>W1711106207
LTRQ01000003
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
74649
74740
+
Ser
GCT
[ENA]
¡û
>W1711106914
LTSH01000089
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
19386
19295
-
Ser
GCT
[ENA]
¡û
>W1711108180
LTTL01000089
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
17192
17101
-
Ser
GCT
[ENA]
¡û
>W1711108504
LTTU01000060
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
59644
59553
-
Ser
GCT
[ENA]
¡û
>W1711108572
LTTW01000032
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
186565
186656
+
Ser
GCT
[ENA]
¡û
>W1711108720
LTTZ01000090
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
23356
23265
-
Ser
GCT
[ENA]
¡û
>W1711109307
LTUN01000063
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
68238
68329
+
Ser
GCT
[ENA]
¡û
>W1711109358
LTUP01000011
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
8681
8772
+
Ser
GCT
[ENA]
¡û
>W1711109480
LTUR01000089
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
9837
9928
+
Ser
GCT
[ENA]
¡û
>W1711109761
LTUY01000009
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
2258
2167
-
Ser
GCT
[ENA]
¡û
>W1711110605
LTVS01000008
Actinomycetota
Corynebacterium sp. HMSC072D12 [LTVS]
764
673
-
Ser
GCT
[ENA]
¡û
>W1711110845
LTVX01000091
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
18320
18229
-
Ser
GCT
[ENA]
¡û
>W1711110991
LTWA01000097
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
14647
14738
+
Ser
GCT
[ENA]
¡û
>W1711111629
LTWQ01000038
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
83254
83163
-
Ser
GCT
[ENA]
¡û
>W1711112366
LTXJ01000013
Actinomycetota
Corynebacterium sp. HMSC077D03 [LTXJ]
82702
82611
-
Ser
GCT
[ENA]
¡û
>W1711112853
LTXU01000020
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
34132
34041
-
Ser
GCT
[ENA]
¡û
>W1711185962
LWNV01000017
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
44026
43935
-
Ser
GCT
[ENA]
¡û
>W1711186276
LWOC01000021
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
87636
87727
+
Ser
GCT
[ENA]
¡û
>W1711186403
LWOE01000048
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
9405
9496
+
Ser
GCT
[ENA]
¡û
>W1711186457
LWOF01000082
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
69226
69317
+
Ser
GCT
[ENA]
¡û
>W1711186591
LWOI01000069
Actinomycetota
Corynebacterium sp. HMSC05E07 [LWOI]
4497
4406
-
Ser
GCT
[ENA]
¡û
>W1711186633
LWOJ01000047
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
86493
86584
+
Ser
GCT
[ENA]
¡û
>W1711186677
LWOK01000015
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
83742
83651
-
Ser
GCT
[ENA]
¡û
>W1711188258
LWQH01000004
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
81650
81559
-
Ser
GCT
[ENA]
¡û
>C171001910
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
201793
201884
+
Ser
GCT
-
¡û
>WENV181326243
OFLL01000014
[OFLL] metagenome; faeces
68225
68314
+
Ser
GCT
[ENA]
¢þ
>WENV182629109
OJKR01005174
[OJKR] metagenome; surface
1289
1378
+
Ser
GCT
[ENA]
¢þ
>WENV182636351
OJKZ01004134
[OJKZ] metagenome; surface
2263
2352
+
Ser
GCT
[ENA]
¢þ
>WENV182641893
OJLK01007642
[OJLK] metagenome; surface
546
635
+
Ser
GCT
[ENA]
¢þ
>WENV182641940
OJLL01000049
[OJLL] metagenome; surface
10615
10704
+
Ser
GCT
[ENA]
¢þ
>WENV182643364
OJLU01004280
[OJLU] metagenome; surface
764
675
-
Ser
GCT
[ENA]
¢þ
>WENV182644012
OJLW01005050
[OJLW] metagenome; surface
1468
1557
+
Ser
GCT
[ENA]
¢þ
>WENV182644316
OJLW01021982
[OJLW] metagenome; surface
555
466
-
Ser
GCT
[ENA]
¢þ
>WENV182644373
OJLW01027601
[OJLW] metagenome; surface
6
97
+
Ser
GCT
[ENA]
¢þ
>WENV182645185
OJLY01003834
[OJLY] metagenome; surface
2263
2352
+
Ser
GCT
[ENA]
¢þ
>WENV182645704
OJLZ01000958
[OJLZ] metagenome; surface
555
466
-
Ser
GCT
[ENA]
¢þ
>WENV182646590
OJMC01000010
[OJMC] metagenome; surface
5700
5609
-
Ser
GCT
[ENA]
¢þ
>WENV182671649
OJNM01000846
[OJNM] metagenome; surface
6636
6725
+
Ser
GCT
[ENA]
¢þ
>WENV183083771
OLJD01002699
[OLJD] human gut metagenome; human gut
399
308
-
Ser
GCT
[ENA]
¢þ
>C181108798
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
2125079
2124990
-
Ser
GCT
-
¡û
>C181108835
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
2271116
2271205
+
Ser
GCT
-
¡û
>C181144738
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
127487
127577
+
Ser
GCT
-
¡û
>C181214821
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
2585755
2585666
-
Ser
GCT
-
¡û
>C191207652
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
347292
347381
+
Ser
GCT
-
¡û
>W09122454
ACGE01000132
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
68640
68549
-
Ser
GCT
[ENA]
¡û
>W09127836
ACLH01000037
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
35011
35102
+
Ser
GCT
[ENA]
¡û
>W1910180427
BJLD01000001
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
533063
532972
-
Ser
GCT
[ENA]
¡û
>W1910182653
BJNB01000056
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
6480
6571
+
Ser
GCT
[ENA]
¡û
>W1910598664
LBCN01000009
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
51795
51886
+
Ser
GCT
[ENA]
¡û
>W1910640579
LTBE01000007
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
15327
15236
-
Ser
GCT
[ENA]
¡û
>W1910640618
LTBF01000004
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
282251
282342
+
Ser
GCT
[ENA]
¡û
>W1910640750
LTBH01000019
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
58082
57991
-
Ser
GCT
[ENA]
¡û
>C09102723
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
130941
131032
+
Ser
GCT
[Ensembl]
¡û
>W1911204389
NRIL01000028
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
112828
112737
-
Ser
GCT
[ENA]
¡û
>W1911204445
NRIM01000027
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
94089
93998
-
Ser
GCT
[ENA]
¡û
>W1911204511
NRIN01000032
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
15393
15302
-
Ser
GCT
[ENA]
¡û
>W1911204517
NRIO01000001
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
15383
15292
-
Ser
GCT
[ENA]
¡û
>W1911204642
NRIP01000034
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
15391
15300
-
Ser
GCT
[ENA]
¡û
>W1911390853
NWBP01000007
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
12421
12330
-
Ser
GCT
[ENA]
¡û
>W1911596672
PNHI01000017
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
50244
50333
+
Ser
GCT
[ENA]
¡û
>W1810187576
PKHR01000006
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
83447
83358
-
Ser
GCT
[ENA]
¡û
>C151073104
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
120853
120944
+
Ser
GCT
[Ensembl]
¡û
>C151079692
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
127505
127596
+
Ser
GCT
[Ensembl]
¡û
>W1511356306
JRUB01000004
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
54726
54635
-
Ser
GCT
[ENA]
¡û
>W1511365532
JSEF01000004
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
225132
225223
+
Ser
GCT
[ENA]
¡û
>W1511438083
JULV01000146
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
78175
78266
+
Ser
GCT
[ENA]
¡û
>W1511438115
JULW01000067
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
76450
76541
+
Ser
GCT
[ENA]
¡û
>W1511438571
JUMN01000114
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
3315
3224
-
Ser
GCT
[ENA]
¡û
>W1511443093
JUSN01000104
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
47772
47681
-
Ser
GCT
[ENA]
¡û
>W1511449450
JVBA01000090
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
19629
19538
-
Ser
GCT
[ENA]
¡û
>W1511451259
JVCW01000022
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
79692
79601
-
Ser
GCT
[ENA]
¡û
>W1511467848
JVTL01000049
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
86813
86904
+
Ser
GCT
[ENA]
¡û
>W1511467914
JVTN01000033
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
30712
30803
+
Ser
GCT
[ENA]
¡û
>W1511585499
LAYQ01000001
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
187593
187684
+
Ser
GCT
[ENA]
¡û
>W1511585574
LAYR01000004
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
192202
192111
-
Ser
GCT
[ENA]
¡û
>C161074807
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
1269776
1269685
-
Ser
GCT
[Ensembl]
¡û
>C161074857
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
1418553
1418462
-
Ser
GCT
-
¡û
>W1610068151
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
127393
127484
+
Ser
GCT
[ENA]
¡û
>W1610507469
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
22114
22023
-
Ser
GCT
[ENA]
¡û
>W1610907160
LSCZ01000005
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
72081
72172
+
Ser
GCT
[ENA]
¡û
>W1610919423
LSRB01000082
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
62479
62388
-
Ser
GCT
[ENA]
¡û
>W1610926410
LTEB01000009
Actinomycetota
Corynebacterium simulans [LTEB]
67736
67827
+
Ser
GCT
[ENA]
¡û
>W1710065524
BCRC01000005
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
127393
127484
+
Ser
GCT
[ENA]
¡û
>W1710499687
FLTI01000014
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
22114
22023
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK