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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135575 (16 seq.)
>W1711409708
MGPB01000033
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
35817
35731
-
Leu
TAG
[ENA]
¡û
>W1711709054
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
630588
630674
+
Leu
TAG
[ENA]
¡û
>C171091717
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1459702
1459788
+
Leu
TAG
-
¡û
>C017337
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2102385
2102471
+
Leu
TAG
[Ensembl]
¡û
>WENV180022091
FTFO01000265
[FTFO] metagenome; soil
366
452
+
Leu
TAG
[ENA]
¡û
>WENV180257733
OBEQ010937442
[OBEQ] groundwater metagenome; groundwater
462
548
+
Leu
TAG
[ENA]
¡û
>WENV180263028
OBEQ011436927
[OBEQ] groundwater metagenome; groundwater
1926
1840
-
Leu
TAG
[ENA]
¡û
>C08007651
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
2102385
2102471
+
Leu
TAG
[Ensembl]
¡û
>W09101617
AAFQ02000006
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
39549
39463
-
Leu
TAG
[ENA]
¡û
>W1910700234
MESI01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
77397
77483
+
Leu
TAG
[ENA]
¡û
>W1910726028
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
555029
554943
-
Leu
TAG
[ENA]
¡û
>W1810594306
QFZK01000001
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
136966
137052
+
Leu
TAG
[ENA]
¡û
>W2010833660
MESI01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
77397
77483
+
Leu
TAG
[ENA]
¡û
>W2010859456
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
555029
554943
-
Leu
TAG
[ENA]
¡û
>C211118871
CP059068
Betaproteobacteria
Rhodoferax sp. AJA081-3 [CP059068]
1238738
1238652
-
Leu
TAG
-
¡û
>C231541572
CP111109
Betaproteobacteria
Comamonadaceae bacterium AAW [CP111109]
111939
111853
-
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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