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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.135906 (9 seq.)
>WENV180288820
OBIM01004201
[OBIM] human gut metagenome; human gut
2043
1965
-
Leu
TAA
[ENA]
¡û
>WENV180533335
OCHL01050781
[OCHL] human gut metagenome; human gut
91
13
-
Leu
TAA
[ENA]
¡û
>WENV181726899
OGPZ01009972
[OGPZ] human gut metagenome; faeces
3027
2949
-
Leu
TAA
[ENA]
¡û
>WENV182019203
OHBY01000031
[OHBY] human gut metagenome; feces
13132
13054
-
Leu
TAA
[ENA]
¡û
>WENV182144942
OHKX01000039
[OHKX] human gut metagenome; feces
23694
23616
-
Leu
TAA
[ENA]
¡û
>WENV182145914
OHKZ01000026
[OHKZ] human gut metagenome; feces
42972
42894
-
Leu
TAA
[ENA]
¡û
>WENV182915533
OKTS01000039
[OKTS] human gut metagenome; feces
84029
83951
-
Leu
TAA
[ENA]
¡û
>WENV183430583
OMBQ01000121
[OMBQ] human gut metagenome; feces
4299
4377
+
Leu
TAA
[ENA]
¡û
>WENV183608184
OODP01001506
[OODP] human gut metagenome; human gut
7014
7090
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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