This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.136730 (9 seq.)
>A171002428
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1835889
1835966
+
Val
TAC
-
¡û
>A171006453
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
9876
9799
-
Val
TAC
-
¡û
>A178000145
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
217440
217335
-
Val
TAC
-
¡û
>WENV180299799
OBJC01123893
[OBJC] metagenome; water
107
30
-
Val
TAC
[ENA]
¢þ
>At0098
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
360308
360385
+
Val
TAC
[Ensembl]
¡û
>At0407
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
633113
633007
-
Val
TAC
[Ensembl]
¡û
>W1910015305
BDMD01000040
Thermoproteota
Aeropyrum pernix YK1-12-2013 [BDMD]
16503
16426
-
Val
TAC
[ENA]
¡û
>W1910870003
NCQP01000002
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
68776
68853
+
Val
TAC
[ENA]
¡û
>W1610772488
LNTB01000001
Thermoproteota
Pyrodictium occultum PL-19 [LNTB]
110179
110256
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK