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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13711 (13 seq.)
>W131108958
APGP01000072
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
10215
10123
-
Ser
GGA
[ENA]
¡û
>WENV180014329
FPIC01171050
[FPIC] soil metagenome; Soil
307
215
-
Ser
GGA
[ENA]
¢þ
>WENV181226161
OFDK01000122
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
28177
28269
+
Ser
GGA
[ENA]
¢þ
>WENV181285501
OFGS01001166
[OFGS] hot springs metagenome; Water and soil
1224
1316
+
Ser
GGA
[ENA]
¢þ
>C10103652
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2339163
2339255
+
Ser
GGA
[Ensembl]
¡û
>C11105235
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
477592
477500
-
Ser
GGA
[Ensembl]
¡û
>C11105460
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
428983
428891
-
Ser
GGA
[Ensembl]
¡û
>C11105504
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
354076
353984
-
Ser
GGA
[Ensembl]
¡û
>C11105858
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2280369
2280461
+
Ser
GGA
[Ensembl]
¡û
>W11139391
AEKB01000015
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
75253
75345
+
Ser
GGA
[ENA]
¡û
>W11139489
AEKD01000064
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
580
672
+
Ser
GGA
[ENA]
¡û
>W1511564032
LACN01000012
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
400465
400373
-
Ser
GGA
[ENA]
¡û
>W1511564033
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
45918
46010
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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