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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.137717 (71 seq.)
>W1710991595
LPXV01000004
Bacillota
Levilactobacillus brevis [LPXV]
9082
9006
-
Ile
GAT
[ENA]
¡û
>W1711098861
LTJY01000362
Bacillota
Enterococcus sp. HMSC077E04 [LTJY]
196
272
+
Ile
GAT
[ENA]
¡û
>W131184907
ARTH01000071
Bacillota
Levilactobacillus parabrevis ATCC 53295 [ARTH]
39313
39237
-
Ile
GAT
[ENA]
¡û
>W1711373150
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
1975108
1975184
+
Ile
GAT
[ENA]
¡û
>W1711687603
MSCR01000050
Bacillota
Ligilactobacillus salivarius [MSCR]
262
186
-
Ile
GAT
[ENA]
¡û
>W1711748602
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
925283
925359
+
Ile
GAT
[ENA]
¡û
>W1711943525
NBDY01000033
Bacillota
Ligilactobacillus salivarius [NBDY]
262
186
-
Ile
GAT
[ENA]
¡û
>W1711943828
NBEF01000064
Bacillota
Ligilactobacillus salivarius [NBEF]
52
128
+
Ile
GAT
[ENA]
¡û
>W1711943838
NBEG01000008
Bacillota
Ligilactobacillus salivarius [NBEG]
78
154
+
Ile
GAT
[ENA]
¡û
>W1711944111
NBEL01000045
Bacillota
Ligilactobacillus salivarius [NBEL]
262
186
-
Ile
GAT
[ENA]
¡û
>W1711944206
NBEN01000017
Bacillota
Ligilactobacillus salivarius [NBEN]
262
186
-
Ile
GAT
[ENA]
¡û
>W1711944252
NBEO01000048
Bacillota
Ligilactobacillus salivarius [NBEO]
33
109
+
Ile
GAT
[ENA]
¡û
>W1711944537
NBEU01000029
Bacillota
Ligilactobacillus salivarius [NBEU]
33
109
+
Ile
GAT
[ENA]
¡û
>W1711944660
NBEX01000116
Bacillota
Ligilactobacillus salivarius [NBEX]
94
170
+
Ile
GAT
[ENA]
¡û
>W1712036931
NFHV01000037
Bacillota
Ligilactobacillus salivarius [NFHV]
321
245
-
Ile
GAT
[ENA]
¡û
>C171099145
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1064783
1064859
+
Ile
GAT
-
¡û
>C171113738
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
12892
12968
+
Ile
GAT
-
¡û
>C171113768
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1612649
1612573
-
Ile
GAT
-
¡û
>C171113779
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1438049
1437973
-
Ile
GAT
-
¡û
>C171131727
LT854705
Bacillota
Levilactobacillus zymae ACA-DC 3411 [LT854705]
1646285
1646209
-
Ile
GAT
-
¡û
>WENV180251337
OBEQ010359247
[OBEQ] groundwater metagenome; groundwater
335
258
-
Ile
GAT
[ENA]
¢þ
>WENV180350154
OBLO01264560
[OBLO] metagenome; feces
78
152
+
Ile
GAT
[ENA]
¢þ
>WENV181304074
OFHW01000209
[OFHW] metagenome; Caecal content
5156
5080
-
Ile
GAT
[ENA]
¢þ
>WENV181429021
OGCW01010743
[OGCW] metagenome; Human gut stool
132
208
+
Ile
GAT
[ENA]
¢þ
>WENV181429570
OGCX01019409
[OGCX] metagenome; Human gut stool
563
639
+
Ile
GAT
[ENA]
¢þ
>W141229745
BAOT01000005
Bacillota
Levilactobacillus namurensis str. Chizuka 01 [BAOT]
25769
25692
-
Ile
GAT
[ENA]
¡û
>W141256176
CBVR010000069
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
1159
1083
-
Ile
GAT
[ENA]
¡û
>WENV170637459
JFBN01323187
[JFBN] chicken gut metagenome; ceca of Broiler chicken
762
686
-
Ile
GAT
[ENA]
¢þ
>C181203552
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
655334
655410
+
Ile
GAT
-
¡û
>C181203567
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
1541209
1541133
-
Ile
GAT
-
¡û
>C181203590
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
1231585
1231509
-
Ile
GAT
-
¡û
>C191074040
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
924375
924451
+
Ile
GAT
-
¡û
>W09101494
AAEV01000038
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
3216
3140
-
Ile
GAT
[ENA]
¡û
>W09101499
AAEV01000041
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
1487
1413
-
Ile
GAT
[ENA]
¡û
>W1910231001
FPCM01000112
Bacillota
Levilactobacillus brevis [FPCM]
1358
1434
+
Ile
GAT
[ENA]
¡û
>C141009491
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
688784
688860
+
Ile
GAT
[Ensembl]
¡û
>W1910650045
LXZK01000086
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
3408
3332
-
Ile
GAT
[ENA]
¡û
>W1910650323
LXZQ01000088
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
3293
3217
-
Ile
GAT
[ENA]
¡û
>W1910874558
NDYW01000043
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
161
237
+
Ile
GAT
[ENA]
¡û
>W1810699063
QMCB01000005
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
1529
1605
+
Ile
GAT
[ENA]
¡û
>W1810780412
QQPA01000069
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
78983
78907
-
Ile
GAT
[ENA]
¡û
>W1810838155
QSTB01000005
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
94955
95031
+
Ile
GAT
[ENA]
¡û
>C151030904
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
421668
421744
+
Ile
GAT
[Ensembl]
¡û
>C151030941
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
1826371
1826295
-
Ile
GAT
[Ensembl]
¡û
>C151089901
CP012033
Bacillota
Levilactobacillus koreensis 26-25 [CP012033]
70484
70408
-
Ile
GAT
[Ensembl]
¡û
>C10109008
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
219900
219976
+
Ile
GAT
[Ensembl]
¡û
>C10109020
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
437056
437132
+
Ile
GAT
[Ensembl]
¡û
>C10109055
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
1817972
1817896
-
Ile
GAT
[Ensembl]
¡û
>W1511512403
JXUG01000003
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
975951
976027
+
Ile
GAT
[ENA]
¡û
>W1511538775
JZCR01000014
Bacillota
Levilactobacillus spicheri LP38 [JZCR]
1396
1472
+
Ile
GAT
[ENA]
¡û
>W11168611
AFOI01000004
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
479562
479486
-
Ile
GAT
[ENA]
¡û
>C161086926
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1261648
1261724
+
Ile
GAT
-
¡û
>C161092310
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
565845
565919
+
Ile
GAT
[Ensembl]
¡û
>C161092337
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1325910
1325836
-
Ile
GAT
[Ensembl]
¡û
>C161092353
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1321085
1321009
-
Ile
GAT
[Ensembl]
¡û
>W121045083
AICL01000001
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
47531
47455
-
Ile
GAT
[ENA]
¡û
>W121045097
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
171986
172062
+
Ile
GAT
[ENA]
¡û
>W121045109
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
619736
619812
+
Ile
GAT
[ENA]
¡û
>W1610037583
AZGD01000050
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
1183
1259
+
Ile
GAT
[ENA]
¡û
>W1610037604
AZGD01000087
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
12502
12578
+
Ile
GAT
[ENA]
¡û
>W1610529401
JQCA01000166
Bacillota
Levilactobacillus paucivorans [JQCA]
5140
5064
-
Ile
GAT
[ENA]
¡û
>W1610530025
JQCN01000066
Bacillota
Ligilactobacillus pobuzihii [JQCN]
51625
51549
-
Ile
GAT
[ENA]
¡û
>W1610530042
JQCN01000068
Bacillota
Ligilactobacillus pobuzihii [JQCN]
223
147
-
Ile
GAT
[ENA]
¡û
>W1610530165
JQCQ01000048
Bacillota
Pediococcus argentinicus [JQCQ]
126
202
+
Ile
GAT
[ENA]
¡û
>W1610650081
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
1352
1428
+
Ile
GAT
[ENA]
¡û
>W1710034622
AZGD01000050
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
1183
1259
+
Ile
GAT
[ENA]
¡û
>W1710034643
AZGD01000087
Bacillota
Ligilactobacillus hayakitensis DSM 18933 = JCM 14209 [AZGD]
12502
12578
+
Ile
GAT
[ENA]
¡û
>W1710630991
JQCA01000166
Bacillota
Levilactobacillus paucivorans [JQCA]
5140
5064
-
Ile
GAT
[ENA]
¡û
>W1710631615
JQCN01000066
Bacillota
Ligilactobacillus pobuzihii [JQCN]
51625
51549
-
Ile
GAT
[ENA]
¡û
>W1710631632
JQCN01000068
Bacillota
Ligilactobacillus pobuzihii [JQCN]
223
147
-
Ile
GAT
[ENA]
¡û
>W1710631755
JQCQ01000048
Bacillota
Pediococcus argentinicus [JQCQ]
126
202
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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