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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.138841 (27 seq.)
>W131182129
ARQC01000592
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
373
450
+
Arg
TCG
[ENA]
¡û
>C024102
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
993196
993273
+
Arg
TCG
[Ensembl]
¡û
>WENV170008746
APHM01004158
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
374
451
+
Arg
TCG
[ENA]
¡û
>C181192091
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1022939
1023015
+
Arg
TCG
-
¡û
>C191072355
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
983628
983704
+
Arg
TCG
-
¡û
>C191072399
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
995096
995172
+
Arg
TCG
-
¡û
>C191072445
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1107258
1107334
+
Arg
TCG
-
¡û
>C191072489
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1020154
1020230
+
Arg
TCG
-
¡û
>C191072534
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1062946
1063022
+
Arg
TCG
-
¡û
>W1910785942
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
797522
797597
+
Arg
TCG
[ENA]
¡û
>W1910870033
NCQX01000005
Rhodothermota
Salinibacter ruber SP273 [NCQX]
60882
60958
+
Arg
TCG
[ENA]
¡û
>W1910870104
NCQY01000025
Rhodothermota
Salinibacter sp. AN15 [NCQY]
19160
19085
-
Arg
TCG
[ENA]
¡û
>W1910870133
NCQZ01000027
Rhodothermota
Salinibacter sp. LL19 [NCQZ]
70044
70119
+
Arg
TCG
[ENA]
¡û
>W1910870193
NCRA01000028
Rhodothermota
Salinibacter sp. AN4 [NCRA]
66210
66285
+
Arg
TCG
[ENA]
¡û
>W1910870238
NCRB01000040
Rhodothermota
Salinivenus iranica CB7 [NCRB]
21893
21818
-
Arg
TCG
[ENA]
¡û
>W1910870283
NCRC01000029
Rhodothermota
Salinivenus lutea DBO [NCRC]
14495
14570
+
Arg
TCG
[ENA]
¡û
>W2010726582
JACIFB010000010
Rhodothermota
Salinibacter ruber SD01 [JACIFB]
105937
105861
-
Arg
TCG
[ENA]
¡û
>W2010726588
JACIFC010000001
Rhodothermota
Salinibacter ruber SD11 [JACIFC]
185386
185462
+
Arg
TCG
[ENA]
¡û
>W2010726786
JACIFG010000018
Rhodothermota
Salinibacter ruber SP2521 [JACIFG]
28089
28165
+
Arg
TCG
[ENA]
¡û
>W2010894469
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
797522
797597
+
Arg
TCG
[ENA]
¡û
>W2010938931
NCQX01000005
Rhodothermota
Salinibacter ruber SP273 [NCQX]
60882
60958
+
Arg
TCG
[ENA]
¡û
>W2010939002
NCQY01000025
Rhodothermota
Salinibacter sp. AN15 [NCQY]
19160
19085
-
Arg
TCG
[ENA]
¡û
>W2010939031
NCQZ01000027
Rhodothermota
Salinibacter sp. LL19 [NCQZ]
70044
70119
+
Arg
TCG
[ENA]
¡û
>W2010939091
NCRA01000028
Rhodothermota
Salinibacter sp. AN4 [NCRA]
66210
66285
+
Arg
TCG
[ENA]
¡û
>W2010939136
NCRB01000040
Rhodothermota
Salinivenus iranica CB7 [NCRB]
21893
21818
-
Arg
TCG
[ENA]
¡û
>W2010939181
NCRC01000029
Rhodothermota
Salinivenus lutea DBO [NCRC]
14495
14570
+
Arg
TCG
[ENA]
¡û
>C131018221
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1087300
1087377
+
Arg
TCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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