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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139062 (12 seq.)
>WENV180289331
OBIS01000154
[OBIS] soil metagenome; Alaskan Permafrost
773
850
+
Pro
GGG
[ENA]
¡û
>WENV170007289
AMWB02102782
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
243
166
-
Pro
GGG
[ENA]
¡û
>W1911770485
QXIT01000083
Unclassified
Caldiserica bacterium SMC6 [QXIT]
24472
24395
-
Pro
GGG
[ENA]
¡û
>W1911770489
QXIU01000011
Unclassified
Caldiserica bacterium SMC5 [QXIU]
13499
13576
+
Pro
GGG
[ENA]
¡û
>W1911770539
QXIV01000032
Unclassified
Caldiserica bacterium SMC4 [QXIV]
24197
24120
-
Pro
GGG
[ENA]
¡û
>W1911770543
QXIW01000002
Unclassified
Caldiserica bacterium SMC3 [QXIW]
77329
77406
+
Pro
GGG
[ENA]
¡û
>W1911770646
QXIY01000025
Unclassified
Caldiserica bacterium SMC1 [QXIY]
16387
16310
-
Pro
GGG
[ENA]
¡û
>W2011327785
QXIT01000083
Unclassified
Caldiserica bacterium SMC6 [QXIT]
24472
24395
-
Pro
GGG
[ENA]
¡û
>W2011327789
QXIU01000011
Unclassified
Caldiserica bacterium SMC5 [QXIU]
13499
13576
+
Pro
GGG
[ENA]
¡û
>W2011327839
QXIV01000032
Unclassified
Caldiserica bacterium SMC4 [QXIV]
24197
24120
-
Pro
GGG
[ENA]
¡û
>W2011327843
QXIW01000002
Unclassified
Caldiserica bacterium SMC3 [QXIW]
77329
77406
+
Pro
GGG
[ENA]
¡û
>W2011327946
QXIY01000025
Unclassified
Caldiserica bacterium SMC1 [QXIY]
16387
16310
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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