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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139214 (44 seq.)
>W1710857450
LMAH01000003
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
349766
349843
+
Val
TAC
[ENA]
¡û
>W1710857451
LMAH01000003
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
349874
349951
+
Val
TAC
[ENA]
¡û
>W1710877950
LMQN01000015
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
877150
877227
+
Val
TAC
[ENA]
¡û
>W1710877951
LMQN01000015
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
877260
877337
+
Val
TAC
[ENA]
¡û
>W1711300902
MAHK01000004
Bacteroidota
Elizabethkingia miricola [MAHK]
7394
7471
+
Val
TAC
[ENA]
¡û
>W1712081999
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
1202087
1202164
+
Val
TAC
[ENA]
¡û
>W131220947
AUAA01000007
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
90341
90418
+
Val
TAC
[ENA]
¡û
>W131220948
AUAA01000007
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
90450
90527
+
Val
TAC
[ENA]
¡û
>W131235287
AULL01000012
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
51342
51265
-
Val
TAC
[ENA]
¡û
>WENV181195893
OEQV01000997
[OEQV] metagenome; water of meat washing
1654
1579
-
Val
TAC
[ENA]
¢þ
>WENV183742172
PJUH01000914
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
570
645
+
Val
TAC
[ENA]
¢þ
>WENV183742518
PJUI01000006
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
690369
690444
+
Val
TAC
[ENA]
¢þ
>C191115864
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
1341252
1341177
-
Val
TAC
-
¡û
>C191115865
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
1341143
1341068
-
Val
TAC
-
¡û
>C191120474
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2339081
2339005
-
Val
TAC
-
¡û
>C191156075
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
922431
922355
-
Val
TAC
-
¡û
>C191156076
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
921839
921763
-
Val
TAC
-
¡û
>C191211140
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
2255068
2255144
+
Val
TAC
-
¡û
>W141802044
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
252234
252311
+
Val
TAC
[ENA]
¡û
>W141806148
JPLY01000001
Bacteroidota
Epilithonimonas lactis [JPLY]
953699
953622
-
Val
TAC
[ENA]
¡û
>W141806149
JPLY01000001
Bacteroidota
Epilithonimonas lactis [JPLY]
953590
953513
-
Val
TAC
[ENA]
¡û
>W141806197
JPLZ01000002
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
499569
499492
-
Val
TAC
[ENA]
¡û
>W141806198
JPLZ01000002
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
499460
499383
-
Val
TAC
[ENA]
¡û
>W141816640
JQKA01000009
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
303275
303352
+
Val
TAC
[ENA]
¡û
>W141816654
JQKA01000013
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
17
94
+
Val
TAC
[ENA]
¡û
>W1911701708
QNVS01000004
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
7020
6945
-
Val
TAC
[ENA]
¡û
>W1810234068
PPED02000004
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
540109
540184
+
Val
TAC
[ENA]
¡û
>W1810234378
PPEI02000003
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
186396
186321
-
Val
TAC
[ENA]
¡û
>W1810234379
PPEI02000003
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
186287
186212
-
Val
TAC
[ENA]
¡û
>W1511390836
JSYK01000002
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
486636
486713
+
Val
TAC
[ENA]
¡û
>W1511390883
JSYL01000003
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
11544
11467
-
Val
TAC
[ENA]
¡û
>W1511432063
JUGG01000009
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
338395
338472
+
Val
TAC
[ENA]
¡û
>C161084427
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2041677
2041754
+
Val
TAC
[Ensembl]
¡û
>W1610719831
LMAH01000003
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
349766
349843
+
Val
TAC
[ENA]
¡û
>W1610719832
LMAH01000003
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
349874
349951
+
Val
TAC
[ENA]
¡û
>W1610740296
LMQN01000015
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
877150
877227
+
Val
TAC
[ENA]
¡û
>W1610740297
LMQN01000015
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
877260
877337
+
Val
TAC
[ENA]
¡û
>W1710538654
FNUS01000003
Bacteroidota
Halpernia humi [FNUS]
118509
118586
+
Val
TAC
[ENA]
¡û
>W1710554934
FOIX01000001
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
261230
261307
+
Val
TAC
[ENA]
¡û
>W1710564832
FOQT01000003
Bacteroidota
Halpernia frigidisoli [FOQT]
325638
325715
+
Val
TAC
[ENA]
¡û
>W1710591968
FRCD01000001
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
141239
141314
+
Val
TAC
[ENA]
¡û
>W1710591969
FRCD01000001
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
141349
141426
+
Val
TAC
[ENA]
¡û
>W1710594988
FSRQ01000002
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
371903
371826
-
Val
TAC
[ENA]
¡û
>W1710603355
FUYZ01000003
Bacteroidota
Soonwooa buanensis [FUYZ]
51076
51001
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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