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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139401 (34 seq.)
>W1711573611
MNDM01000061
Nitrospirota
Nitrospirae bacterium 13_2_20CM_2_62_8 [MNDM]
73135
73058
-
Glu
CTC
[ENA]
¡û
>C171131439
LT828648
Nitrospirota
Nitrospira japonica [LT828648]
541627
541550
-
Glu
CTC
-
¡û
>WENV180042031
LLBZ010981966
[LLBZ] soil metagenome; soil from tomato rhizosphere
696
773
+
Glu
CTC
[ENA]
¡û
>WENV180283624
OBID01001148
[OBID] metagenome; sludge
7610
7687
+
Glu
CTC
[ENA]
¡û
>WENV180327232
OBKT01014588
[OBKT] soil metagenome; soil
108
185
+
Glu
CTC
[ENA]
¡û
>WENV180583976
OCNM01000935
[OCNM] soil metagenome; soil
413
336
-
Glu
CTC
[ENA]
¡û
>WENV180693207
OCZS011074755
[OCZS] soil metagenome; soil
132
55
-
Glu
CTC
[ENA]
¡û
>WENV181168166
OEIU01185631
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
346
423
+
Glu
CTC
[ENA]
¡û
>WENV181172712
OEIV010929064
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
172
95
-
Glu
CTC
[ENA]
¡û
>WENV181184916
OEKW01000146
[OEKW] metagenome; 1998
1739
1662
-
Glu
CTC
[ENA]
¡û
>WENV181185021
OELA01000242
[OELA] metagenome; 1998
33579
33656
+
Glu
CTC
[ENA]
¡û
>WENV181188457
OEOE01139652
[OEOE] activated sludge metagenome; Activated Sludge
161
238
+
Glu
CTC
[ENA]
¡û
>WENV181191583
OEPS010124229
[OEPS] soil metagenome; soil
122
45
-
Glu
CTC
[ENA]
¡û
>WENV170553855
CXWK01034562
[CXWK] wastewater metagenome; activated sludge
7821
7898
+
Glu
CTC
[ENA]
¡û
>WENV170556433
CXWL01008473
[CXWL] groundwater metagenome; biofilm material
13063
13140
+
Glu
CTC
[ENA]
¡û
>WENV170565738
FKKE01000338
[FKKE] freshwater metagenome; freshwater
9619
9696
+
Glu
CTC
[ENA]
¡û
>WENV170565760
FKKE01000520
[FKKE] freshwater metagenome; freshwater
107664
107741
+
Glu
CTC
[ENA]
¡û
>WENV170566101
FKKE01006340
[FKKE] freshwater metagenome; freshwater
8684
8761
+
Glu
CTC
[ENA]
¡û
>WENV170566103
FKKE01006570
[FKKE] freshwater metagenome; freshwater
106
29
-
Glu
CTC
[ENA]
¡û
>WENV170566104
FKKE01006582
[FKKE] freshwater metagenome; freshwater
5037
5114
+
Glu
CTC
[ENA]
¡û
>WENV170576627
FRDC01001162
[FRDC] freshwater metagenome; water
32173
32250
+
Glu
CTC
[ENA]
¡û
>WENV170577055
FRDC01002871
[FRDC] freshwater metagenome; water
79
2
-
Glu
CTC
[ENA]
¡û
>WENV170652046
JRYG01057994
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3412
3489
+
Glu
CTC
[ENA]
¡û
>WENV170653593
JRYJ01010825
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
11395
11318
-
Glu
CTC
[ENA]
¡û
>WENV170974214
MTKY01055803
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
76
1
-
Glu
CTC
[ENA]
¡û
>W1910441970
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
2233829
2233906
+
Glu
CTC
[ENA]
¡û
>W1910731630
MHEU01000067
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 [MHEU]
35746
35669
-
Glu
CTC
[ENA]
¡û
>W2010405395
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
2233829
2233906
+
Glu
CTC
[ENA]
¡û
>W2010865060
MHEU01000067
Nitrospirota
Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 [MHEU]
35746
35669
-
Glu
CTC
[ENA]
¡û
>W2110115309
CAJNBJ010000001
Nitrospirota
Nitrospira defluvii [CAJNBJ]
1503287
1503364
+
Glu
CTC
[ENA]
¡û
>C211096000
CP054184
Nitrospirota
Nitrospira sp. [CP054184]
2663812
2663889
+
Glu
CTC
-
¡û
>C241267273
CP126123
Nitrospirota
Nitrospira sp. [CP126123]
3305762
3305839
+
Glu
CTC
-
¡û
>C241387558
OX365700
Nitrospirota
Nitrospira sp. DNF [OX365700]
4003366
4003289
-
Glu
CTC
-
¡û
>C10109739
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
3971359
3971282
-
Glu
CTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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