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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139749 (125 seq.)
>W1711713285
MTCY01000010
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
46735
46658
-
Val
TAC
[ENA]
¡û
>W1711713286
MTCY01000010
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
46626
46549
-
Val
TAC
[ENA]
¡û
>W1711713430
MTDA01000055
Bacteroidota
Flavobacterium covae columnare [MTDA]
186
111
-
Val
TAC
[ENA]
¡û
>W1711737976
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521020
521095
+
Val
TAC
[ENA]
¡û
>W1711737977
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521128
521203
+
Val
TAC
[ENA]
¡û
>W1711737978
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521236
521311
+
Val
TAC
[ENA]
¡û
>W1711737979
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521344
521419
+
Val
TAC
[ENA]
¡û
>W1711737980
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521452
521527
+
Val
TAC
[ENA]
¡û
>W1711737981
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521560
521635
+
Val
TAC
[ENA]
¡û
>W1711737982
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
521668
521745
+
Val
TAC
[ENA]
¡û
>C171086268
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2493113
2493038
-
Val
TAC
-
¡û
>C171086269
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2493005
2492930
-
Val
TAC
-
¡û
>C171086270
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492897
2492822
-
Val
TAC
-
¡û
>C171086271
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492789
2492714
-
Val
TAC
-
¡û
>C171086272
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492681
2492604
-
Val
TAC
-
¡û
>C171086273
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492573
2492498
-
Val
TAC
-
¡û
>C171086274
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2492465
2492388
-
Val
TAC
-
¡û
>WENV182560572
OJDU01007482
[OJDU] seawater metagenome; Sea water
47
122
+
Val
TAC
[ENA]
¡û
>WENV170274511
CERM01021187
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3128
3051
-
Val
TAC
[ENA]
¡û
>WENV170305213
CESI01125917
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
241
318
+
Val
TAC
[ENA]
¡û
>WENV170326191
CEST01143008
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
647
722
+
Val
TAC
[ENA]
¡û
>WENV170818766
MDSX01078504
[MDSX] marine metagenome; seawater
9875
9952
+
Val
TAC
[ENA]
¡û
>C181047473
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
1873855
1873930
+
Val
TAC
-
¡û
>C181047496
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
2976940
2976863
-
Val
TAC
-
¡û
>W2011176706
PCMX01000060
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
10344
10269
-
Val
TAC
[ENA]
¡û
>W2011492341
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191309
191384
+
Val
TAC
[ENA]
¡û
>W2011492342
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191424
191499
+
Val
TAC
[ENA]
¡û
>W2011492343
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191538
191613
+
Val
TAC
[ENA]
¡û
>W2011492344
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191652
191727
+
Val
TAC
[ENA]
¡û
>W2011492345
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191767
191842
+
Val
TAC
[ENA]
¡û
>W2011492346
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191881
191956
+
Val
TAC
[ENA]
¡û
>W2011492347
RWGX01000004
Bacteroidota
Flavobacterium columnare BGFS27 [RWGX]
191995
192070
+
Val
TAC
[ENA]
¡û
>W2011531118
SBII01000010
Bacteroidota
Flavobacterium sp. 1E403 [SBII]
8328
8251
-
Val
TAC
[ENA]
¡û
>W2011678276
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
177909
177984
+
Val
TAC
[ENA]
¡û
>W2011678277
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178024
178099
+
Val
TAC
[ENA]
¡û
>W2011678278
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178138
178213
+
Val
TAC
[ENA]
¡û
>W2011678279
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178252
178327
+
Val
TAC
[ENA]
¡û
>W2011678280
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178367
178442
+
Val
TAC
[ENA]
¡û
>W2011678281
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178481
178556
+
Val
TAC
[ENA]
¡û
>W2011678282
SRKT01000003
Bacteroidota
Flavobacterium columnare 1723 [SRKT]
178595
178670
+
Val
TAC
[ENA]
¡û
>W2012378106
WMHH01000023
Bacteroidota
Flavobacterium columnare CC1808 [WMHH]
186
111
-
Val
TAC
[ENA]
¡û
>W2012378107
WMHH01000023
Bacteroidota
Flavobacterium columnare CC1808 [WMHH]
77
2
-
Val
TAC
[ENA]
¡û
>C201295642
CP058306
Bacteroidota
Flavobacterium sp. I3-2 [CP058306]
2720977
2720902
-
Val
TAC
-
¡û
>C211097436
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822023
2822098
+
Val
TAC
-
¡û
>C211097437
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822131
2822206
+
Val
TAC
-
¡û
>C211097438
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822239
2822314
+
Val
TAC
-
¡û
>C211097439
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822347
2822422
+
Val
TAC
-
¡û
>C211097440
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822455
2822530
+
Val
TAC
-
¡û
>C211097441
CP054495
Bacteroidota
Flavobacterium columnare F2S4 [CP054495]
2822563
2822638
+
Val
TAC
-
¡û
>C211097521
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822041
2822116
+
Val
TAC
-
¡û
>C211097522
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822149
2822224
+
Val
TAC
-
¡û
>C211097523
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822257
2822332
+
Val
TAC
-
¡û
>C211097524
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822365
2822440
+
Val
TAC
-
¡û
>C211097525
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822473
2822548
+
Val
TAC
-
¡û
>C211097526
CP054496
Bacteroidota
Flavobacterium columnare F2R74 [CP054496]
2822581
2822656
+
Val
TAC
-
¡û
>C211097776
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822023
2822098
+
Val
TAC
-
¡û
>C211097777
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822131
2822206
+
Val
TAC
-
¡û
>C211097778
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822239
2822314
+
Val
TAC
-
¡û
>C211097779
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822347
2822422
+
Val
TAC
-
¡û
>C211097780
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822455
2822530
+
Val
TAC
-
¡û
>C211097781
CP054499
Bacteroidota
Flavobacterium columnare F2R68 [CP054499]
2822563
2822638
+
Val
TAC
-
¡û
>C211097861
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822022
2822097
+
Val
TAC
-
¡û
>C211097862
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822130
2822205
+
Val
TAC
-
¡û
>C211097863
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822238
2822313
+
Val
TAC
-
¡û
>C211097864
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822346
2822421
+
Val
TAC
-
¡û
>C211097865
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822454
2822529
+
Val
TAC
-
¡û
>C211097866
CP054500
Bacteroidota
Flavobacterium columnare F2R67 [CP054500]
2822562
2822637
+
Val
TAC
-
¡û
>C211097946
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822018
2822093
+
Val
TAC
-
¡û
>C211097947
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822126
2822201
+
Val
TAC
-
¡û
>C211097948
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822234
2822309
+
Val
TAC
-
¡û
>C211097949
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822342
2822417
+
Val
TAC
-
¡û
>C211097950
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822450
2822525
+
Val
TAC
-
¡û
>C211097951
CP054501
Bacteroidota
Flavobacterium columnare F2R66 [CP054501]
2822558
2822633
+
Val
TAC
-
¡û
>C211098286
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822040
2822115
+
Val
TAC
-
¡û
>C211098287
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822148
2822223
+
Val
TAC
-
¡û
>C211098288
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822256
2822331
+
Val
TAC
-
¡û
>C211098289
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822364
2822439
+
Val
TAC
-
¡û
>C211098290
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822472
2822547
+
Val
TAC
-
¡û
>C211098291
CP054505
Bacteroidota
Flavobacterium columnare F2R60 [CP054505]
2822580
2822655
+
Val
TAC
-
¡û
>C211098371
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822040
2822115
+
Val
TAC
-
¡û
>C211098372
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822148
2822223
+
Val
TAC
-
¡û
>C211098373
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822256
2822331
+
Val
TAC
-
¡û
>C211098374
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822364
2822439
+
Val
TAC
-
¡û
>C211098375
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822472
2822547
+
Val
TAC
-
¡û
>C211098376
CP054506
Bacteroidota
Flavobacterium columnare F2R58 [CP054506]
2822580
2822655
+
Val
TAC
-
¡û
>C211098513
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
911001
910926
-
Val
TAC
-
¡û
>C211098514
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
910893
910818
-
Val
TAC
-
¡û
>C211098515
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
910785
910710
-
Val
TAC
-
¡û
>C211098516
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
910677
910602
-
Val
TAC
-
¡û
>C211098517
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
910569
910494
-
Val
TAC
-
¡û
>C211098518
CP054507
Bacteroidota
Flavobacterium columnare F9S17 [CP054507]
910461
910386
-
Val
TAC
-
¡û
>C211098958
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910962
910887
-
Val
TAC
-
¡û
>C211098959
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910854
910779
-
Val
TAC
-
¡û
>C211098960
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910746
910671
-
Val
TAC
-
¡û
>C211098961
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910638
910563
-
Val
TAC
-
¡û
>C211098962
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910530
910455
-
Val
TAC
-
¡û
>C211098963
CP054512
Bacteroidota
Flavobacterium columnare F9R69 [CP054512]
910422
910347
-
Val
TAC
-
¡û
>C211099314
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910961
910886
-
Val
TAC
-
¡û
>C211099315
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910853
910778
-
Val
TAC
-
¡û
>C211099316
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910745
910670
-
Val
TAC
-
¡û
>C211099317
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910637
910562
-
Val
TAC
-
¡û
>C211099318
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910529
910454
-
Val
TAC
-
¡û
>C211099319
CP054517
Bacteroidota
Flavobacterium columnare F9R56 [CP054517]
910421
910346
-
Val
TAC
-
¡û
>C211099403
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910995
910920
-
Val
TAC
-
¡û
>C211099404
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910887
910812
-
Val
TAC
-
¡û
>C211099405
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910779
910704
-
Val
TAC
-
¡û
>C211099406
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910671
910596
-
Val
TAC
-
¡û
>C211099407
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910563
910488
-
Val
TAC
-
¡û
>C211099408
CP054518
Bacteroidota
Flavobacterium columnare FCO-F9 [CP054518]
910455
910380
-
Val
TAC
-
¡û
>C211238369
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046259
3046334
+
Val
TAC
-
¡û
>C211238370
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046368
3046443
+
Val
TAC
-
¡û
>C211238371
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046477
3046552
+
Val
TAC
-
¡û
>C211238372
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046586
3046661
+
Val
TAC
-
¡û
>C211238373
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046694
3046769
+
Val
TAC
-
¡û
>C211238374
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046802
3046877
+
Val
TAC
-
¡û
>C211238375
CP067377
Bacteroidota
Flavobacterium columnare Costa Rica 04-02-TN [CP067377]
3046911
3046986
+
Val
TAC
-
¡û
>WENV046307
AACY022587769
Marine microbial communities from Global Ocean Sampling (GOS)
610
687
+
Val
TAC
[ENA]
>C161063739
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355599
1355524
-
Val
TAC
[Ensembl]
¡û
>C161063740
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355485
1355410
-
Val
TAC
[Ensembl]
¡û
>C161063741
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355371
1355296
-
Val
TAC
[Ensembl]
¡û
>C161063742
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355257
1355182
-
Val
TAC
[Ensembl]
¡û
>C161063743
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355142
1355065
-
Val
TAC
[Ensembl]
¡û
>C161063744
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
1355027
1354952
-
Val
TAC
[Ensembl]
¡û
>W1610626534
LICI01000190
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
2703
2780
+
Val
TAC
[ENA]
¡û
>W1710757661
LICI01000190
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
2703
2780
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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