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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140037 (79 seq.)
>W1710778270
LJCU01000258
Actinomycetota
Actinobacteria bacterium OK006 [LJCU]
144507
144582
+
Leu
CAA
[ENA]
¡û
>W1710784382
LJGW01000427
Actinomycetota
Streptomyces nanshensis [LJGW]
7685
7760
+
Leu
CAA
[ENA]
¡û
>W1710856408
LLZJ01000232
Actinomycetota
Streptomyces violaceusniger [LLZJ]
155505
155580
+
Leu
CAA
[ENA]
¡û
>W1710862804
LMEQ01000001
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
287138
287213
+
Leu
CAA
[ENA]
¡û
>W1710947923
LOSR01000225
Actinomycetota
Streptomyces sp. CC71 [LOSR]
31689
31764
+
Leu
CAA
[ENA]
¡û
>W1711172425
LWCC01000001
Actinomycetota
Streptomyces chilikensis [LWCC]
514159
514234
+
Leu
CAA
[ENA]
¡û
>W1711750962
MUNH01000914
Actinomycetota
Streptomyces recifensis [MUNH]
186
261
+
Leu
CAA
[ENA]
¡û
>W1711770802
MVFC01000026
Actinomycetota
Streptomyces tsukubensis [MVFC]
11024
10949
-
Leu
CAA
[ENA]
¡û
>W131098711
AORZ01000136
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [AORZ]
886
961
+
Leu
CAA
[ENA]
¡û
>W131174478
ARIM01000054
Actinomycetota
Streptomyces sp. CNT302 [ARIM]
206097
206172
+
Leu
CAA
[ENA]
¡û
>W131204693
ATCE01000026
Actinomycetota
Streptomyces sp. HPH0547 [ATCE]
16069
16144
+
Leu
CAA
[ENA]
¡û
>WENV180016596
FSVL01000002
[FSVL] metagenome; soil
1390
1315
-
Leu
CAA
[ENA]
¡û
>WENV180033491
FTKK01050146
[FTKK] metagenome; soil
244
319
+
Leu
CAA
[ENA]
¡û
>W141219508
AZXC01000002
Actinomycetota
Streptomyces sp. CNR698 [AZXC]
258296
258221
-
Leu
CAA
[ENA]
¡û
>C181175975
CP029188
Actinomycetota
Streptomyces tirandamycinicus HNM0039 [CP029188]
735699
735774
+
Leu
CAA
-
¡û
>W141764334
JOCQ01000050
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOCQ]
8805
8730
-
Leu
CAA
[ENA]
¡û
>W141770360
JOGK01000042
Actinomycetota
Streptomyces sp. NRRL F-5639 [JOGK]
3624
3549
-
Leu
CAA
[ENA]
¡û
>W141772182
JOHQ01000031
Actinomycetota
Streptomyces sp. NRRL F-5917 [JOHQ]
3644
3569
-
Leu
CAA
[ENA]
¡û
>W141821639
JQNR01000003
Actinomycetota
Actinacidiphila yeochonensis CN732 [JQNR]
177961
177886
-
Leu
CAA
[ENA]
¡û
>W1930030819
NSKH01000018
Actinomycetota
Streptomyces sp. ICBB 8177 [NSKH]
1510669
1510594
-
Leu
CAA
[ENA]
¡û
>W1910001444
AQRJ01000047
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
4223
4147
-
Leu
CAA
[ENA]
¡û
>W2010071853
AQRJ01000047
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
4223
4147
-
Leu
CAA
[ENA]
¡û
>W2010139458
BLLG01000003
Actinomycetota
Streptomyces sp. CWH03 [BLLG]
357461
357386
-
Leu
CAA
[ENA]
¡û
>W2010270096
CABKSN020000001
Actinomycetota
Streptomycetaceae bacterium [CABKSN]
1710380
1710455
+
Leu
CAA
[ENA]
¡û
>W2010467345
JAAGMR010000034
Actinomycetota
Streptomyces bauhiniae SID7754 [JAAGMR]
7757
7682
-
Leu
CAA
[ENA]
¡û
>W2010494537
JAAKZZ010000059
Actinomycetota
Streptomyces sp. SB3404 [JAAKZZ]
14326
14401
+
Leu
CAA
[ENA]
¡û
>W2010499561
JAALLH010000001
Actinomycetota
Streptomyces malaysiensis DSM 14702 [JAALLH]
3420592
3420667
+
Leu
CAA
[ENA]
¡û
>W2010595537
JABETO010000028
Actinomycetota
Streptomyces sp. I05A-00742 [JABETO]
72008
71933
-
Leu
CAA
[ENA]
¡û
>W2010614115
JABSUD010000136
Actinomycetota
Streptomyces lunaelactis MM22 [JABSUD]
13419
13495
+
Leu
CAA
[ENA]
¡û
>W2010614650
JABSUM010000021
Actinomycetota
Streptomyces lunaelactis MM83 [JABSUM]
13279
13355
+
Leu
CAA
[ENA]
¡û
>W2010614941
JABSUQ010000145
Actinomycetota
Streptomyces lunaelactis MM115 [JABSUQ]
6872
6796
-
Leu
CAA
[ENA]
¡û
>W2010653127
JACADT010000023
Actinomycetota
Streptomyces sp. UH6 [JACADT]
11072
11147
+
Leu
CAA
[ENA]
¡û
>W2010663215
JACBGN010000242
Actinomycetota
Streptomyces sp. BR123 [JACBGN]
7823
7898
+
Leu
CAA
[ENA]
¡û
>W2010688541
JACGSQ010000025
Actinomycetota
Streptomyces sp. GMR22 [JACGSQ]
292482
292407
-
Leu
CAA
[ENA]
¡û
>W2010698645
JACHEM010000001
Actinomycetota
Streptomyces candidus DSM 40141 [JACHEM]
108051
108126
+
Leu
CAA
[ENA]
¡û
>W2010709426
JACHME010000002
Actinomycetota
Streptomyces haliclonae DSM 41968 [JACHME]
946904
946979
+
Leu
CAA
[ENA]
¡û
>W2010710988
JACHNG010000001
Actinomycetota
Streptomyces rapamycinicus DSM 41530 [JACHNG]
8829129
8829054
-
Leu
CAA
[ENA]
¡û
>W2010752057
JACLQY010000019
Actinomycetota
Streptomyces sp. TYQ1024 [JACLQY]
113257
113182
-
Leu
CAA
[ENA]
¡û
>W2011399119
RCIY01000002
Actinomycetota
Streptomyces albus DSM 40763 [RCIY]
451889
451814
-
Leu
CAA
[ENA]
¡û
>W2011409064
RDBP01000037
Actinomycetota
Streptomyces sp. t39 [RDBP]
344399
344324
-
Leu
CAA
[ENA]
¡û
>W2011416888
RHDP01000001
Actinomycetota
Streptomyces sp. I6 [RHDP]
1346332
1346407
+
Leu
CAA
[ENA]
¡û
>W2011580071
SHKU01000003
Actinomycetota
Streptomyces sp. BK022 [SHKU]
1001985
1001910
-
Leu
CAA
[ENA]
¡û
>W2011662917
SOMP01000010
Actinomycetota
Streptomyces sp. ICN441 [SOMP]
118662
118587
-
Leu
CAA
[ENA]
¡û
>W2011680478
SRRU01000002
Actinomycetota
Streptomyces griseoluteus JCM 4765 [SRRU]
504632
504557
-
Leu
CAA
[ENA]
¡û
>W2012105075
VOKX01000033
Actinomycetota
Streptomyces mobaraensis US-43 [VOKX]
189339
189414
+
Leu
CAA
[ENA]
¡û
>W2012477265
WWJN01000007
Actinomycetota
Streptomyces sp. SID4919 [WWJN]
53374
53298
-
Leu
CAA
[ENA]
¡û
>W2012478537
WWKH01000730
Actinomycetota
Streptomyces sp. SID1328 [WWKH]
13503
13578
+
Leu
CAA
[ENA]
¡û
>W2110040899
BMTA01000010
Actinomycetota
Streptomyces chromofuscus JCM 4354 [BMTA]
213985
214060
+
Leu
CAA
[ENA]
¡û
>W2110043926
BMUX01000002
Actinomycetota
Streptomyces spiroverticillatus JCM 4609 [BMUX]
256787
256862
+
Leu
CAA
[ENA]
¡û
>W2110044272
BMVC01000005
Actinomycetota
Streptomyces finlayi JCM 4637 [BMVC]
275564
275489
-
Leu
CAA
[ENA]
¡û
>W2110053169
BNBN01000001
Actinomycetota
Streptomyces candidus JCM 4629 [BNBN]
945217
945142
-
Leu
CAA
[ENA]
¡û
>W2110053356
BNBQ01000001
Actinomycetota
Streptomyces griseoluteus JCM 4765 [BNBQ]
221753
221828
+
Leu
CAA
[ENA]
¡û
>W2110315789
JADGFX010000015
Actinomycetota
Streptomyces sp. FS75 [JADGFX]
104771
104846
+
Leu
CAA
[ENA]
¡û
>W2110520752
JAFVLN010000012
Actinomycetota
Streptomyces sp. VRA16 Mangrove soil [JAFVLN]
287547
287622
+
Leu
CAA
[ENA]
¡û
>W2110542536
JAGGOV010000015
Actinomycetota
Streptomyces sp. ISL-63 [JAGGOV]
188366
188441
+
Leu
CAA
[ENA]
¡û
>W2110641174
JAHRIC010000046
Actinomycetota
Streptomyces sp. BV129 [JAHRIC]
30987
31062
+
Leu
CAA
[ENA]
¡û
>W2110688907
JAINRF010000014
Actinomycetota
Streptomyces sp. PHES57 [JAINRF]
33431
33356
-
Leu
CAA
[ENA]
¡û
>W2110692948
JAIQLH010000023
Actinomycetota
Streptomyces sp. SCA2-4 [JAIQLH]
9061
9136
+
Leu
CAA
[ENA]
¡û
>C211139612
CP060825
Actinomycetota
Streptomyces sp. CRPJ-33 [CP060825]
1670027
1670102
+
Leu
CAA
-
¡û
>C211176433
CP063374
Actinomycetota
Streptomyces chromofuscus DSM 40273 [CP063374]
2088962
2089037
+
Leu
CAA
-
¡û
>C211314017
CP072827
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [CP072827]
1907767
1907842
+
Leu
CAA
-
¡û
>W1510013992
BBPM01000007
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
37026
36951
-
Leu
CAA
[ENA]
¡û
>C211403071
CP083590
Actinomycetota
Streptomyces mobaraensis DSM 40587 [CP083590]
5695680
5695605
-
Leu
CAA
-
¡û
>C231018443
AP025667
Actinomycetota
Streptomyces seoulensis HEK131 [AP025667]
1699428
1699353
-
Leu
CAA
-
¡û
>C231311554
CP092051
Actinomycetota
Streptomyces sp. TYQ1024 [CP092051]
5702727
5702652
-
Leu
CAA
-
¡û
>C231342065
CP094262
Actinomycetota
Streptomyces mobaraensis DSM 40587 [CP094262]
5702381
5702306
-
Leu
CAA
-
¡û
>C231463825
CP103060
Actinomycetota
Streptomyces albus DSM 40763 [CP103060]
5918704
5918629
-
Leu
CAA
-
¡û
>C241054792
CP040916
Actinomycetota
Streptomyces spectabilis NRRL 2792 [CP040916]
2491367
2491442
+
Leu
CAA
-
¡û
>C241132068
CP048875
Actinomycetota
Streptomyces albus CAS922 [CP048875]
2154021
2154096
+
Leu
CAA
-
¡û
>W10126632
AEDI01000013
Actinomycetota
Streptomyces violaceusniger Tu 4113 [AEDI]
92318
92393
+
Leu
CAA
[ENA]
¡û
>C241200092
CP107784
Actinomycetota
Streptomyces sp. NBC_00566 [CP107784]
4882733
4882658
-
Leu
CAA
-
¡û
>C241200647
CP107834
Actinomycetota
Streptomyces sp. NBC_00525 [CP107834]
1315831
1315906
+
Leu
CAA
-
¡û
>W1610615007
LGKH01001112
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
189943
190018
+
Leu
CAA
[ENA]
¡û
>W1610633242
LIQO01000304
Actinomycetota
Streptomyces albus flocculus [LIQO]
4239
4314
+
Leu
CAA
[ENA]
¡û
>W1610981030
LWCC01000001
Actinomycetota
Streptomyces chilikensis [LWCC]
514159
514234
+
Leu
CAA
[ENA]
¡û
>W1710503947
FMHM01000016
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
53374
53297
-
Leu
CAA
[ENA]
¡û
>W1710736253
LGKH01001112
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
189943
190018
+
Leu
CAA
[ENA]
¡û
>W1710767674
LIQO01000304
Actinomycetota
Streptomyces albus flocculus [LIQO]
4239
4314
+
Leu
CAA
[ENA]
¡û
>W1710768291
LIQZ01000256
Actinomycetota
Streptomyces phaeochromogenes [LIQZ]
6120
6045
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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