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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140272 (13 seq.)
>w027454
ABCE01000034
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
16710
16633
-
Glu
TTC
[ENA]
¡û
>WENV170014910
AZIC01004489
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
5197
5121
-
Glu
TTC
[ENA]
¡û
>WENV170121153
CENL01054132
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
119448
119374
-
Glu
TTC
[ENA]
¡û
>WENV170612892
FUWD012732068
[FUWD] metagenome; unknown
270
194
-
Glu
TTC
[ENA]
¡û
>WENV170668243
LADL02002093
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1609
1535
-
Glu
TTC
[ENA]
¡û
>SRA1027787
SRR035086.191742
454 Sequencing (SRP001807)
62
138
+
Glu
TTC
[SRA]
>W2012143760
VTSR01000014
Planctomycetota
Gimesia sp. JC646 [VTSR]
39328
39402
+
Glu
TTC
[ENA]
¡û
>C241044011
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
831491
831565
+
Glu
TTC
-
¡û
>C241044505
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
4176967
4176893
-
Glu
TTC
-
¡û
>C241044528
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
786889
786963
+
Glu
TTC
-
¡û
>C241069918
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
774553
774627
+
Glu
TTC
-
¡û
>C241083588
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
2987161
2987087
-
Glu
TTC
-
¡û
>C241083631
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
6924872
6924798
-
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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