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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140372 (43 seq.)
>W1711317450
MAXH01000063
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
4462
4385
-
Pro
TGG
[ENA]
¡û
>W1711317578
MAXK01000271
Thermodesulfobacteriota
Desulfobulbaceae bacterium S5133MH15 [MAXK]
27971
28048
+
Pro
TGG
[ENA]
¡û
>W1711317728
MAXQ01000258
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
9751
9674
-
Pro
TGG
[ENA]
¡û
>W131224499
AUCV01000053
Thermodesulfobacteriota
Desulfogranum japonicum DSM 18378 [AUCV]
35167
35244
+
Pro
TGG
[ENA]
¡û
>W131224532
AUCW01000012
Thermodesulfobacteriota
Desulfogranum mediterraneum DSM 13871 [AUCW]
13369
13292
-
Pro
TGG
[ENA]
¡û
>C007924
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
721311
721234
-
Pro
TGG
[Ensembl]
¡û
>WENV180109332
OAPJ01081562
[OAPJ] marine metagenome; ENVO 00002150
260
337
+
Pro
TGG
[ENA]
¡û
>WENV183705820
PDWI01002349
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
663
586
-
Pro
TGG
[ENA]
¡û
>WENV183705959
PDWI01002743
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2349
2272
-
Pro
TGG
[ENA]
¡û
>WENV183708934
PDWI01021562
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5671
5748
+
Pro
TGG
[ENA]
¡û
>WENV183717055
PDWJ01000413
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
64267
64344
+
Pro
TGG
[ENA]
¡û
>WENV183722134
PDWJ01107879
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
187
264
+
Pro
TGG
[ENA]
¡û
>WENV183722624
PDWJ01143803
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
187
264
+
Pro
TGG
[ENA]
¡û
>WENV183722626
PDWJ01143876
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
142
65
-
Pro
TGG
[ENA]
¡û
>WENV183747113
PPCM01000220
[PPCM] marine sediment metagenome; marine sediment
44720
44643
-
Pro
TGG
[ENA]
¡û
>WENV170007323
AMWB02106781
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1873
1796
-
Pro
TGG
[ENA]
¡û
>WENV170405740
CEUG01156219
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
468
545
+
Pro
TGG
[ENA]
¡û
>WENV170668333
LADL02003004
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
248
325
+
Pro
TGG
[ENA]
¡û
>WENV170695278
LGVE01069963
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
466
389
-
Pro
TGG
[ENA]
¡û
>WENV170696546
LGVF01026550
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
9751
9674
-
Pro
TGG
[ENA]
¡û
>WENV170696791
LGVF01049883
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
16
93
+
Pro
TGG
[ENA]
¡û
>W1910805247
MTKS01000185
Thermodesulfobacteriota
Candidatus Electrothrix marina [MTKS]
4053
4130
+
Pro
TGG
[ENA]
¡û
>SRA1039497
SRR035090.503685
454 Sequencing (SRP001811)
41
118
+
Pro
TGG
[SRA]
>W2010912959
MTKS01000185
Thermodesulfobacteriota
Candidatus Electrothrix marina [MTKS]
4053
4130
+
Pro
TGG
[ENA]
¡û
>W2011702069
SWCK01000010
Thermodesulfobacteriota
Desulfopila sp. IMCC35004 [SWCK]
32749
32672
-
Pro
TGG
[ENA]
¡û
>W2011702155
SWCL01000010
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
187291
187368
+
Pro
TGG
[ENA]
¡û
>W2011702157
SWCL01000010
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
192857
192934
+
Pro
TGG
[ENA]
¡û
>W2011702215
SWCM01000009
Thermodesulfobacteriota
Desulfopila sp. IMCC35006 [SWCM]
41362
41285
-
Pro
TGG
[ENA]
¡û
>W2011702274
SWCN01000030
Thermodesulfobacteriota
Desulforhopalus sp. IMCC35007 [SWCN]
41296
41373
+
Pro
TGG
[ENA]
¡û
>W2012331781
WIAA01000004
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [WIAA]
13343
13266
-
Pro
TGG
[ENA]
¡û
>W2110494717
JAFFQD010000041
Thermodesulfobacteriota
Desulfobulbus marinus DSM 2058 [JAFFQD]
3316
3239
-
Pro
TGG
[ENA]
¡û
>W2110494745
JAFFQE010000002
Thermodesulfobacteriota
Desulfopila inferna DSM 19738 [JAFFQE]
304102
304025
-
Pro
TGG
[ENA]
¡û
>W2110504204
JAFITO010000032
Thermodesulfobacteriota
Desulfotalea psychrophila [JAFITO]
2690
2767
+
Pro
TGG
[ENA]
¡û
>C211013550
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
3283249
3283172
-
Pro
TGG
-
¡û
>C231014875
AP025516
Thermodesulfobacteriota
Desulfobulbaceae bacterium PPLL [AP025516]
3348075
3347998
-
Pro
TGG
-
¡û
>C241146434
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
5218994
5218917
-
Pro
TGG
-
¡û
>C241146436
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
5213428
5213351
-
Pro
TGG
-
¡û
>C241146476
CP050699
Thermodesulfobacteriota
Desulfosediminicola ganghwensis IMCC35004 [CP050699]
1203344
1203421
+
Pro
TGG
-
¡û
>C241146571
CP050700
Thermodesulfobacteriota
Desulfopila sp. IMCC35008 [CP050700]
4580284
4580207
-
Pro
TGG
-
¡û
>W1511564399
LADS01000013
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
61748
61671
-
Pro
TGG
[ENA]
¡û
>W1511564440
LADS01000061
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
145625
145548
-
Pro
TGG
[ENA]
¡û
>C131010907
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
935399
935322
-
Pro
TGG
[Ensembl]
¡û
>W1710525182
FNJI01000013
Thermodesulfobacteriota
Desulforhopalus singaporensis [FNJI]
80595
80672
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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