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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140812 (123 seq.)
>W1710859077
LMBW01000073
Bacillota
Fredinandcohnia humi [LMBW]
94
12
-
Leu
TAG
[ENA]
¡û
>W1711018654
LQXD01000001
Bacillota
Anaerobacillus isosaccharinicus NB2006 [LQXD]
191319
191236
-
Leu
TAG
[ENA]
¡û
>W1711018698
LQXD01000009
Bacillota
Anaerobacillus isosaccharinicus NB2006 [LQXD]
1284
1367
+
Leu
TAG
[ENA]
¡û
>W1711019159
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
7286
7204
-
Leu
TAG
[ENA]
¡û
>W1711019181
LQXN01000005
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
762
844
+
Leu
TAG
[ENA]
¡û
>W1711019188
LQXN01000038
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
506
424
-
Leu
TAG
[ENA]
¡û
>W1711019231
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
975
892
-
Leu
TAG
[ENA]
¡û
>W1711029270
LRFC01000009
Bacillota
Fictibacillus phosphorivorans [LRFC]
57703
57786
+
Leu
TAG
[ENA]
¡û
>W1711029302
LRFC01000032
Bacillota
Fictibacillus phosphorivorans [LRFC]
307
390
+
Leu
TAG
[ENA]
¡û
>W1711101898
LTNF01000114
Bacillota
Bacillus sp. HMSC76G11 [LTNF]
14512
14429
-
Leu
TAG
[ENA]
¡û
>W1711182106
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1375209
1375291
+
Leu
TAG
[ENA]
¡û
>W1711182160
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
240452
240369
-
Leu
TAG
[ENA]
¡û
>W1711256980
LYTG01000052
Bacillota
Exiguobacterium sp. SH31 [LYTG]
2157
2074
-
Leu
TAG
[ENA]
¡û
>W1711507312
MKXO01000020
Bacillota
Exiguobacterium aurantiacum [MKXO]
804
887
+
Leu
TAG
[ENA]
¡û
>W1711525402
MLQQ01000004
Bacillota
Anaerobacillus arseniciselenatis [MLQQ]
2408
2490
+
Leu
TAG
[ENA]
¡û
>W1711525419
MLQQ01000005
Bacillota
Anaerobacillus arseniciselenatis [MLQQ]
1235
1152
-
Leu
TAG
[ENA]
¡û
>W1711525446
MLQQ01000009
Bacillota
Anaerobacillus arseniciselenatis [MLQQ]
22936
22854
-
Leu
TAG
[ENA]
¡û
>W1711525450
MLQQ01000011
Bacillota
Anaerobacillus arseniciselenatis [MLQQ]
963
880
-
Leu
TAG
[ENA]
¡û
>W1711525524
MLQR01000001
Bacillota
Anaerobacillus alkalilacustris [MLQR]
781602
781519
-
Leu
TAG
[ENA]
¡û
>W1711525548
MLQR01000001
Bacillota
Anaerobacillus alkalilacustris [MLQR]
283010
282930
-
Leu
TAG
[ENA]
¡û
>W1711525578
MLQR01000006
Bacillota
Anaerobacillus alkalilacustris [MLQR]
2913
2994
+
Leu
TAG
[ENA]
¡û
>W1711525582
MLQR01000007
Bacillota
Anaerobacillus alkalilacustris [MLQR]
1300
1217
-
Leu
TAG
[ENA]
¡û
>W1711525604
MLQR01000014
Bacillota
Anaerobacillus alkalilacustris [MLQR]
1062
979
-
Leu
TAG
[ENA]
¡û
>W1711525642
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
1266868
1266949
+
Leu
TAG
[ENA]
¡û
>W1711525673
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
617728
617648
-
Leu
TAG
[ENA]
¡û
>W1711525691
MLQS01000001
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
416554
416471
-
Leu
TAG
[ENA]
¡û
>W1711525721
MLQS01000013
Bacillota
Anaerobacillus alkalidiazotrophicus [MLQS]
1195
1112
-
Leu
TAG
[ENA]
¡û
>W1711657846
MQMF01000011
Bacillota
Fictibacillus arsenicus [MQMF]
17244
17327
+
Leu
TAG
[ENA]
¡û
>W1711657856
MQMF01000037
Bacillota
Fictibacillus arsenicus [MQMF]
600
517
-
Leu
TAG
[ENA]
¡û
>W1711699471
MSLR01000015
Bacillota
Alkalihalophilus pseudofirmus [MSLR]
1006
923
-
Leu
TAG
[ENA]
¡û
>W1711699515
MSLR01000032
Bacillota
Alkalihalophilus pseudofirmus [MSLR]
52889
52806
-
Leu
TAG
[ENA]
¡û
>W1711699547
MSLR01000045
Bacillota
Alkalihalophilus pseudofirmus [MSLR]
2724
2807
+
Leu
TAG
[ENA]
¡û
>W1711699552
MSLR01000064
Bacillota
Alkalihalophilus pseudofirmus [MSLR]
891
808
-
Leu
TAG
[ENA]
¡û
>W1711719936
MTIP01000006
Bacillota
Alkalihalobacterium alkalinitrilicum alkalinitrilicus [MTIP]
16656
16573
-
Leu
TAG
[ENA]
¡û
>W1711719957
MTIP01000008
Bacillota
Alkalihalobacterium alkalinitrilicum alkalinitrilicus [MTIP]
980896
980813
-
Leu
TAG
[ENA]
¡û
>W1711720001
MTIP01000011
Bacillota
Alkalihalobacterium alkalinitrilicum alkalinitrilicus [MTIP]
212068
211985
-
Leu
TAG
[ENA]
¡û
>W1711720023
MTIP01000011
Bacillota
Alkalihalobacterium alkalinitrilicum alkalinitrilicus [MTIP]
88770
88687
-
Leu
TAG
[ENA]
¡û
>W1711720310
MTIS01000003
Bacillota
Litchfieldia alkalitelluris [MTIS]
156791
156709
-
Leu
TAG
[ENA]
¡û
>W1711720332
MTIS01000003
Bacillota
Litchfieldia alkalitelluris [MTIS]
738
657
-
Leu
TAG
[ENA]
¡û
>W1711720341
MTIS01000004
Bacillota
Litchfieldia alkalitelluris [MTIS]
726355
726437
+
Leu
TAG
[ENA]
¡û
>W1711720386
MTIS01000006
Bacillota
Litchfieldia alkalitelluris [MTIS]
67156
67074
-
Leu
TAG
[ENA]
¡û
>W1711720430
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1037438
1037518
+
Leu
TAG
[ENA]
¡û
>W1711720456
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1338623
1338540
-
Leu
TAG
[ENA]
¡û
>W1711720474
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1101194
1101111
-
Leu
TAG
[ENA]
¡û
>C171114045
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
285963
286046
+
Leu
TAG
-
¡û
>C171114079
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
3454112
3454030
-
Leu
TAG
-
¡û
>W131236749
AUMP01000006
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
39588
39505
-
Leu
TAG
[ENA]
¡û
>W131236757
AUMP01000006
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
38353
38270
-
Leu
TAG
[ENA]
¡û
>WENV180101434
OAOU01061003
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
140
57
-
Leu
TAG
[ENA]
¢þ
>W141239688
CAET01000074
Bacillota
Bacillus timonensis 10403023 [CAET]
32181
32099
-
Leu
TAG
[ENA]
¡û
>W141239722
CAET01000079
Bacillota
Bacillus timonensis 10403023 [CAET]
538
455
-
Leu
TAG
[ENA]
¡û
>W141239734
CAET01000094
Bacillota
Bacillus timonensis 10403023 [CAET]
368
450
+
Leu
TAG
[ENA]
¡û
>WENV183710717
PDWI01052187
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3283
3364
+
Leu
TAG
[ENA]
¢þ
>WENV183717473
PDWJ01000965
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
621
702
+
Leu
TAG
[ENA]
¢þ
>C181033562
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4694923
4695003
+
Leu
TAG
-
¡û
>C181033582
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4826032
4826115
+
Leu
TAG
-
¡û
>C181033599
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
3550645
3550565
-
Leu
TAG
-
¡û
>C191029068
CP024921
Bacillota
Bacillus sp. wens01 [CP024921]
484234
484153
-
Leu
TAG
-
¡û
>W141520504
JGVU02000010
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
23341
23424
+
Leu
TAG
[ENA]
¡û
>W141520544
JGVU02000020
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
162
80
-
Leu
TAG
[ENA]
¡û
>W141753933
JNVC02000020
Bacillota
Metabacillus indicus cibi [JNVC]
435
517
+
Leu
TAG
[ENA]
¡û
>W141753940
JNVC02000021
Bacillota
Metabacillus indicus cibi [JNVC]
520
437
-
Leu
TAG
[ENA]
¡û
>W1910340593
FTOX01000015
Bacillota
Bacillus sinesaloumensis Marseille-P3516 [FTOX]
793541
793459
-
Leu
TAG
[ENA]
¡û
>W1910340618
FTOX01000016
Bacillota
Bacillus sinesaloumensis Marseille-P3516 [FTOX]
7297
7215
-
Leu
TAG
[ENA]
¡û
>W1910340626
FTOX01000018
Bacillota
Bacillus sinesaloumensis Marseille-P3516 [FTOX]
90172
90254
+
Leu
TAG
[ENA]
¡û
>W1910340663
FTOX01000019
Bacillota
Bacillus sinesaloumensis Marseille-P3516 [FTOX]
185028
185108
+
Leu
TAG
[ENA]
¡û
>W1910930260
NISO01000001
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
732
652
-
Leu
TAG
[ENA]
¡û
>W1910930275
NISO01000003
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
792393
792473
+
Leu
TAG
[ENA]
¡û
>W1910930328
NISO01000005
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
223917
223834
-
Leu
TAG
[ENA]
¡û
>W1910930431
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2993945
2993865
-
Leu
TAG
[ENA]
¡û
>W1910930455
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2856659
2856576
-
Leu
TAG
[ENA]
¡û
>W1911114446
NOII01000021
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
743
660
-
Leu
TAG
[ENA]
¡û
>W1911114457
NOII01000077
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
684
601
-
Leu
TAG
[ENA]
¡û
>W1911239758
NSEA01000003
Bacillota
Fredinandcohnia onubensis 10J4 [NSEA]
301
383
+
Leu
TAG
[ENA]
¡û
>W1911239818
NSEA01000036
Bacillota
Fredinandcohnia onubensis 10J4 [NSEA]
46384
46465
+
Leu
TAG
[ENA]
¡û
>W1911239826
NSEA01000041
Bacillota
Fredinandcohnia onubensis 10J4 [NSEA]
543
461
-
Leu
TAG
[ENA]
¡û
>W1911239865
NSEB01000014
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
100123
100204
+
Leu
TAG
[ENA]
¡û
>W1911239892
NSEB01000037
Bacillota
Fredinandcohnia onubensis 0911MAR22V3 [NSEB]
236
318
+
Leu
TAG
[ENA]
¡û
>W1911675760
QGHH01000019
Bacillota
Fredinandcohnia aciditolerans YN-1 [QGHH]
91143
91224
+
Leu
TAG
[ENA]
¡û
>W1911708112
QOUX01000024
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
3307
3227
-
Leu
TAG
[ENA]
¡û
>W1911708131
QOUX01000030
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
89692
89775
+
Leu
TAG
[ENA]
¡û
>W1911708205
QOUX01000052
Bacillota
Anaerobacillus alkaliphilus B16-10 [QOUX]
423
506
+
Leu
TAG
[ENA]
¡û
>W1810192143
PKLB01000011
Bacillota
Bacillus sp. UMB0893 [PKLB]
439
356
-
Leu
TAG
[ENA]
¡û
>SRA1004355
SRR006906.7868
metagenomic water samples (SRP000427)
224
141
-
Leu
TAG
[SRA]
>W1810486547
QAXY01000012
Bacillota
Bacillus sp. OV186 [QAXY]
40207
40124
-
Leu
TAG
[ENA]
¡û
>W1810533194
QCZG01000055
Bacillota
Pueribacillus theae T8 [QCZG]
826
743
-
Leu
TAG
[ENA]
¡û
>W1810888154
QUQV01000003
Bacillota
Bacillus sp. HNG [QUQV]
421069
420987
-
Leu
TAG
[ENA]
¡û
>W1810888201
QUQV01000023
Bacillota
Bacillus sp. HNG [QUQV]
52063
52144
+
Leu
TAG
[ENA]
¡û
>W1810888219
QUQV01000056
Bacillota
Bacillus sp. HNG [QUQV]
127
45
-
Leu
TAG
[ENA]
¡û
>W10102182
ACPC01000006
Bacillota
Bacillus sp. m3-13 [ACPC]
563
480
-
Leu
TAG
[ENA]
¡û
>W10102203
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
124801
124884
+
Leu
TAG
[ENA]
¡û
>W11102338
ACPC01000006
Bacillota
Bacillus sp. m3-13 [ACPC]
563
480
-
Leu
TAG
[ENA]
¡û
>W11102359
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
124801
124884
+
Leu
TAG
[ENA]
¡û
>W1511325298
JQGI01000022
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
604
687
+
Leu
TAG
[ENA]
¡û
>W1511679511
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
803
885
+
Leu
TAG
[ENA]
¡û
>W1511679561
LFEL01000008
Bacillota
Bacillus sp. LL01 [LFEL]
844
761
-
Leu
TAG
[ENA]
¡û
>C161042891
CP012600
Bacillota
Bacillus gobiensis FJAT-4402 [CP012600]
3670805
3670887
+
Leu
TAG
[Ensembl]
¡û
>C161042908
CP012600
Bacillota
Bacillus gobiensis FJAT-4402 [CP012600]
4313645
4313727
+
Leu
TAG
[Ensembl]
¡û
>C161042922
CP012600
Bacillota
Bacillus gobiensis FJAT-4402 [CP012600]
2262366
2262284
-
Leu
TAG
[Ensembl]
¡û
>C161086775
CP015378
Bacillota
Fictibacillus phosphorivorans G25-29 [CP015378]
228248
228331
+
Leu
TAG
[Ensembl]
¡û
>C161102907
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
211274
211357
+
Leu
TAG
[Ensembl]
¡û
>W121087076
AKKV01000005
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
78464
78547
+
Leu
TAG
[ENA]
¡û
>W1610584111
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
115277
115360
+
Leu
TAG
[ENA]
¡û
>W1610584115
LBMD01000018
Bacillota
Bacillus sp. CHD6a [LBMD]
246
329
+
Leu
TAG
[ENA]
¡û
>W1610584131
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
1953
1871
-
Leu
TAG
[ENA]
¡û
>W1610586229
LDFV01000006
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
62328
62411
+
Leu
TAG
[ENA]
¡û
>W1610586240
LDFV01000009
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
681
598
-
Leu
TAG
[ENA]
¡û
>W1610721423
LMBW01000073
Bacillota
Fredinandcohnia humi [LMBW]
94
12
-
Leu
TAG
[ENA]
¡û
>W1610867311
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
7286
7204
-
Leu
TAG
[ENA]
¡û
>W1610867333
LQXN01000005
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
762
844
+
Leu
TAG
[ENA]
¡û
>W1610867340
LQXN01000038
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
506
424
-
Leu
TAG
[ENA]
¡û
>W1610867383
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
975
892
-
Leu
TAG
[ENA]
¡û
>W1610877538
LRFC01000009
Bacillota
Fictibacillus phosphorivorans [LRFC]
57703
57786
+
Leu
TAG
[ENA]
¡û
>W1610877570
LRFC01000032
Bacillota
Fictibacillus phosphorivorans [LRFC]
307
390
+
Leu
TAG
[ENA]
¡û
>W1610989323
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1375209
1375291
+
Leu
TAG
[ENA]
¡û
>W1610989377
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
240452
240369
-
Leu
TAG
[ENA]
¡û
>W1710525751
FNJU01000001
Bacillota
Litchfieldia salsa salsus [FNJU]
864147
864064
-
Leu
TAG
[ENA]
¡û
>W1710525838
FNJU01000018
Bacillota
Litchfieldia salsa salsus [FNJU]
58440
58521
+
Leu
TAG
[ENA]
¡û
>W1710531169
FNPI01000056
Bacillota
Evansella caseinilytica caseinilyticus [FNPI]
880
797
-
Leu
TAG
[ENA]
¡û
>W1710560927
FONT01000004
Bacillota
Alteribacillus iranensis [FONT]
761
678
-
Leu
TAG
[ENA]
¡û
>W1710703259
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
115277
115360
+
Leu
TAG
[ENA]
¡û
>W1710703263
LBMD01000018
Bacillota
Bacillus sp. CHD6a [LBMD]
246
329
+
Leu
TAG
[ENA]
¡û
>W1710703279
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
1953
1871
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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