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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141017 (39 seq.)
>W1711393152
MEOH01000026
Bacteroidota
Bacteroidetes bacterium GWF2_38_335 [MEOH]
35373
35296
-
Pro
TGG
[ENA]
¡û
>W131165386
ARBN01000005
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
119607
119532
-
Pro
TGG
[ENA]
¡û
>W131165388
ARBN01000005
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
118910
118835
-
Pro
TGG
[ENA]
¡û
>W131218681
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
1117951
1118026
+
Pro
TGG
[ENA]
¡û
>W131218683
ATXY01000006
Bacteroidota
Flectobacillus major DSM 103 [ATXY]
1118256
1118331
+
Pro
TGG
[ENA]
¡û
>W131228415
AUFX01000009
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
410139
410064
-
Pro
TGG
[ENA]
¡û
>W131228417
AUFX01000009
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
409787
409712
-
Pro
TGG
[ENA]
¡û
>C005861
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
2239532
2239458
-
Pro
TGG
[Ensembl]
¡û
>C005863
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
2239224
2239150
-
Pro
TGG
[Ensembl]
¡û
>WENV180014365
FPIC01203966
[FPIC] soil metagenome; Soil
135
60
-
Pro
TGG
[ENA]
¡û
>WENV180032536
FTKB01021077
[FTKB] metagenome; soil
107
182
+
Pro
TGG
[ENA]
¡û
>W141007786
AGYA01000017
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
55207
55130
-
Pro
TGG
[ENA]
¡û
>WENV180260563
OBEQ011211353
[OBEQ] groundwater metagenome; groundwater
233
308
+
Pro
TGG
[ENA]
¡û
>WENV180309224
OBJR01712873
[OBJR] soil metagenome; soil
204
129
-
Pro
TGG
[ENA]
¡û
>w002438
AABD03000001
Bacteroidota
Cytophaga hutchinsonii [AABD]
241191
241112
-
Pro
TGG
[ENA]
¡û
>w002436
AABD03000001
Bacteroidota
Cytophaga hutchinsonii [AABD]
241499
241420
-
Pro
TGG
[ENA]
¡û
>W141168920
AXVJ01000012
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
124047
123970
-
Pro
TGG
[ENA]
¡û
>W141168944
AXVJ01000063
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
69132
69055
-
Pro
TGG
[ENA]
¡û
>WENV183092630
OLLH01000247
[OLLH] soil metagenome; soil
82111
82036
-
Pro
TGG
[ENA]
¡û
>WENV183092782
OLLL01000086
[OLLL] soil metagenome; soil
56140
56065
-
Pro
TGG
[ENA]
¡û
>WENV183747906
PPFU01002653
[PPFU] hypolithon metagenome; Antarctic Hypolithon
6424
6349
-
Pro
TGG
[ENA]
¡û
>WENV170988884
MWVY01023499
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
313
238
-
Pro
TGG
[ENA]
¡û
>WENV170994513
MWWE01002381
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
140
215
+
Pro
TGG
[ENA]
¡û
>WENV170994705
MWWE01033011
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
672
747
+
Pro
TGG
[ENA]
¡û
>WENV170994803
MWWE01057399
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
507
432
-
Pro
TGG
[ENA]
¡û
>WENV170995245
MWWE01220821
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
243
318
+
Pro
TGG
[ENA]
¡û
>WENV170998070
MWWI01006899
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
257
182
-
Pro
TGG
[ENA]
¡û
>C181193406
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
107672
107747
+
Pro
TGG
-
¡û
>C181193426
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
5965651
5965726
+
Pro
TGG
-
¡û
>C191120391
CP034157
Bacteroidota
Cloacibacterium normanense NRS-1 [CP034157]
1469026
1469101
+
Pro
TGG
-
¡û
>C191120899
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1795507
1795582
+
Pro
TGG
-
¡û
>C191120954
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1003174
1003099
-
Pro
TGG
-
¡û
>W2010386300
FPJX01000003
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
131649
131724
+
Pro
TGG
[ENA]
¡û
>W2010386302
FPJX01000003
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
131957
132032
+
Pro
TGG
[ENA]
¡û
>C201212620
CP048222
Bacteroidota
Rhodocytophaga sp. 172606-1 [CP048222]
6167318
6167243
-
Pro
TGG
-
¡û
>C241032055
CP029149
Bacteroidota
Bergeyella cardium HPQL [CP029149]
1399752
1399827
+
Pro
TGG
-
¡û
>C11118890
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
5963281
5963206
-
Pro
TGG
[Ensembl]
¡û
>C11118908
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
240277
240202
-
Pro
TGG
[Ensembl]
¡û
>W1710524989
FNJE01000002
Bacteroidota
Cloacibacterium normanense [FNJE]
568
491
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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