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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141090 (40 seq.)
>C171127308
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
83933
83850
-
Tyr
GTA
-
¡û
>C171127317
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
644095
644178
+
Tyr
GTA
-
¡û
>C171127361
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
196823
196740
-
Tyr
GTA
-
¡û
>C171127370
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
696675
696758
+
Tyr
GTA
-
¡û
>C171127396
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
436344
436427
+
Tyr
GTA
-
¡û
>C026061
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
349474
349557
+
Tyr
GTA
[Ensembl]
¡û
>w025453
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
83880
83965
+
Tyr
GTA
[ENA]
¡û
>w025425
AAZS01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
96692
96607
-
Tyr
GTA
[ENA]
¡û
>w025399
AAZR01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
5599
5684
+
Tyr
GTA
[ENA]
¡û
>w025368
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
577589
577504
-
Tyr
GTA
[ENA]
¡û
>w024361
AAYQ01000055
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
411
326
-
Tyr
GTA
[ENA]
¡û
>w024359
AAYQ01000031
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
229
144
-
Tyr
GTA
[ENA]
¡û
>w024336
AAYQ01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
37223
37138
-
Tyr
GTA
[ENA]
¡û
>w024326
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
203102
203187
+
Tyr
GTA
[ENA]
¡û
>w024300
AAYO01000008
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
38401
38486
+
Tyr
GTA
[ENA]
¡û
>w024267
AAYN01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
109773
109688
-
Tyr
GTA
[ENA]
¡û
>w024243
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
47114
47199
+
Tyr
GTA
[ENA]
¡û
>WENV180225687
OBBO01000018
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
88248
88165
-
Tyr
GTA
[ENA]
¢þ
>WENV180554101
OCJM01000079
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
582
499
-
Tyr
GTA
[ENA]
¢þ
>W08002241
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
203688
203771
+
Tyr
GTA
[ENA]
¡û
>W08002250
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
650469
650552
+
Tyr
GTA
[ENA]
¡û
>W08002295
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
97112
97032
-
Tyr
GTA
[ENA]
¡û
>W08002322
ABEV01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
37604
37524
-
Tyr
GTA
[ENA]
¡û
>W08002825
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
86659
86579
-
Tyr
GTA
[ENA]
¡û
>C08011086
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
349513
349596
+
Tyr
GTA
[Ensembl]
¡û
>W141455537
JFDP01000023
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
10712
10629
-
Tyr
GTA
[ENA]
¡û
>C191003505
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
168484
168567
+
Tyr
GTA
-
¡û
>C09110771
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
347484
347567
+
Tyr
GTA
[Ensembl]
¡û
>W1911824654
QZWO01000036
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
2405
2322
-
Tyr
GTA
[ENA]
¡û
>W1810735658
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
174083
174166
+
Tyr
GTA
[ENA]
¡û
>W1810735684
QOKU01000055
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
5923
6006
+
Tyr
GTA
[ENA]
¡û
>W1810757234
QPHI01000041
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
9640
9723
+
Tyr
GTA
[ENA]
¡û
>W1810757260
QPHJ01000049
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
9734
9817
+
Tyr
GTA
[ENA]
¡û
>W1810757286
QPHK01000073
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
9662
9745
+
Tyr
GTA
[ENA]
¡û
>C151002395
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
576945
576862
-
Tyr
GTA
[Ensembl]
¡û
>C161022159
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
81219
81302
+
Tyr
GTA
-
¡û
>W121060667
AJFX01000013
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
66369
66286
-
Tyr
GTA
[ENA]
¡û
>W121060672
AJFY01000003
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
96932
96849
-
Tyr
GTA
[ENA]
¡û
>W121060720
AJFZ01000009
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
106273
106190
-
Tyr
GTA
[ENA]
¡û
>W121060747
AJGA01000012
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
66368
66285
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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