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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141184 (103 seq.)
>W131010946
AHYW01000001
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [AHYW]
161640
161723
+
Tyr
GTA
[ENA]
¡û
>W131010957
AHYW01000007
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [AHYW]
96316
96234
-
Tyr
GTA
[ENA]
¡û
>W131011027
AHYX01000008
Bacillota
Enterococcus sulfureus ATCC 49903 [AHYX]
4834
4916
+
Tyr
GTA
[ENA]
¡û
>W131011039
AHYX01000012
Bacillota
Enterococcus sulfureus ATCC 49903 [AHYX]
162908
162824
-
Tyr
GTA
[ENA]
¡û
>W131011041
AHYX01000013
Bacillota
Enterococcus sulfureus ATCC 49903 [AHYX]
99130
99212
+
Tyr
GTA
[ENA]
¡û
>W131167304
ARDE01000011
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ARDE]
97768
97851
+
Tyr
GTA
[ENA]
¡û
>W131167332
ARDE01000020
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ARDE]
665
747
+
Tyr
GTA
[ENA]
¡û
>W131167340
ARDE01000035
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ARDE]
1
84
+
Tyr
GTA
[ENA]
¡û
>W131201906
ASWJ01000002
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ASWJ]
665
747
+
Tyr
GTA
[ENA]
¡û
>W131201919
ASWJ01000004
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ASWJ]
158658
158741
+
Tyr
GTA
[ENA]
¡û
>W131201921
ASWJ01000004
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ASWJ]
158844
158927
+
Tyr
GTA
[ENA]
¡û
>W131201923
ASWJ01000004
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ASWJ]
159030
159113
+
Tyr
GTA
[ENA]
¡û
>W131202157
ASWO01000003
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
223819
223737
-
Tyr
GTA
[ENA]
¡û
>W131202174
ASWO01000005
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
149218
149302
+
Tyr
GTA
[ENA]
¡û
>W131202184
ASWO01000005
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
727832
727750
-
Tyr
GTA
[ENA]
¡û
>W1712036600
NFHQ01000003
Bacillota
Enterococcus cecorum [NFHQ]
56249
56168
-
Tyr
GTA
[ENA]
¡û
>W1712036602
NFHQ01000003
Bacillota
Enterococcus cecorum [NFHQ]
56066
55985
-
Tyr
GTA
[ENA]
¡û
>W1712036604
NFHQ01000003
Bacillota
Enterococcus cecorum [NFHQ]
55884
55803
-
Tyr
GTA
[ENA]
¡û
>W1712036613
NFHQ01000008
Bacillota
Enterococcus cecorum [NFHQ]
87418
87338
-
Tyr
GTA
[ENA]
¡û
>W1712041487
NFLC01000004
Bacillota
Enterococcus cecorum [NFLC]
121004
120924
-
Tyr
GTA
[ENA]
¡û
>W1712041497
NFLC01000010
Bacillota
Enterococcus cecorum [NFLC]
89473
89554
+
Tyr
GTA
[ENA]
¡û
>W1712096930
NIBL01000001
Bacillota
Enterococcus cecorum [NIBL]
1173754
1173673
-
Tyr
GTA
[ENA]
¡û
>W1712096931
NIBL01000001
Bacillota
Enterococcus cecorum [NIBL]
1173564
1173483
-
Tyr
GTA
[ENA]
¡û
>W131165420
ARBO01000006
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ARBO]
672
752
+
Tyr
GTA
[ENA]
¡û
>W131201872
ASWI01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
525549
525630
+
Tyr
GTA
[ENA]
¡û
>W131201874
ASWI01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
525732
525813
+
Tyr
GTA
[ENA]
¡û
>W131201876
ASWI01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
525914
525995
+
Tyr
GTA
[ENA]
¡û
>W131201888
ASWI01000005
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
1350
1430
+
Tyr
GTA
[ENA]
¡û
>W141013030
AHYS01000001
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
138631
138712
+
Tyr
GTA
[ENA]
¡û
>W141013032
AHYS01000001
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
138813
138894
+
Tyr
GTA
[ENA]
¡û
>W141013045
AHYS01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
271667
271587
-
Tyr
GTA
[ENA]
¡û
>WENV180503627
OCAM01091075
[OCAM] human gut metagenome; faeces
58
141
+
Tyr
GTA
[ENA]
¢þ
>WENV181200401
OERK01003939
[OERK] metagenome; water of meat washing
232
151
-
Tyr
GTA
[ENA]
¢þ
>WENV181201170
OERM01005840
[OERM] metagenome; water of meat washing
150
232
+
Tyr
GTA
[ENA]
¢þ
>WENV183511309
OMJG01000022
[OMJG] food metagenome; Cotija cheese
51345
51263
-
Tyr
GTA
[ENA]
¢þ
>C181205055
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
791038
791119
+
Tyr
GTA
-
¡û
>C181205057
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
791221
791302
+
Tyr
GTA
-
¡û
>C181205059
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
791403
791484
+
Tyr
GTA
-
¡û
>C181205080
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
1516930
1516850
-
Tyr
GTA
-
¡û
>C191002801
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
951004
951086
+
Tyr
GTA
-
¡û
>W1910583540
JXKI01000007
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [JXKI]
97514
97597
+
Tyr
GTA
[ENA]
¡û
>W1910583572
JXKL01000005
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
89377
89458
+
Tyr
GTA
[ENA]
¡û
>W1910583574
JXKL01000005
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
89560
89641
+
Tyr
GTA
[ENA]
¡û
>W1910583605
JXKL01000064
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
182
102
-
Tyr
GTA
[ENA]
¡û
>W1910605435
LEOW01000021
Bacillota
Enterococcus cecorum 100AEA1 [LEOW]
3704
3784
+
Tyr
GTA
[ENA]
¡û
>W1910605445
LEOW01000044
Bacillota
Enterococcus cecorum 100AEA1 [LEOW]
5885
5804
-
Tyr
GTA
[ENA]
¡û
>W1910605458
LEOX01000005
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
6501
6420
-
Tyr
GTA
[ENA]
¡û
>W1910605460
LEOX01000005
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
6318
6237
-
Tyr
GTA
[ENA]
¡û
>W1910605462
LEOX01000005
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
6136
6055
-
Tyr
GTA
[ENA]
¡û
>W1910605464
LEOX01000005
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
5953
5872
-
Tyr
GTA
[ENA]
¡û
>W1910605472
LEOX01000008
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
242490
242410
-
Tyr
GTA
[ENA]
¡û
>W1910605519
LEOY01000005
Bacillota
Enterococcus cecorum 170AEA1 [LEOY]
19687
19768
+
Tyr
GTA
[ENA]
¡û
>W1910605542
LEOY01000026
Bacillota
Enterococcus cecorum 170AEA1 [LEOY]
1454
1374
-
Tyr
GTA
[ENA]
¡û
>W1910605554
LEOZ01000001
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
650
730
+
Tyr
GTA
[ENA]
¡û
>W1910605558
LEOZ01000001
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
987
1068
+
Tyr
GTA
[ENA]
¡û
>W1910605566
LEOZ01000007
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
35968
35887
-
Tyr
GTA
[ENA]
¡û
>W1910605568
LEOZ01000008
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
182
101
-
Tyr
GTA
[ENA]
¡û
>W1910605610
LEPA01000003
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
129746
129665
-
Tyr
GTA
[ENA]
¡û
>W1910605622
LEPA01000021
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
103453
103373
-
Tyr
GTA
[ENA]
¡û
>C11114934
AP012200
Bacillota
Melissococcus plutonius ATCC 35311 [AP012200]
951073
951155
+
Tyr
GTA
[Ensembl]
¡û
>W1511360957
JSAV01000003
Bacillota
Melissococcus plutonius 764-5B [JSAV]
652830
652912
+
Tyr
GTA
[ENA]
¡û
>W1511361015
JSAW01000002
Bacillota
Melissococcus plutonius B5 [JSAW]
653491
653573
+
Tyr
GTA
[ENA]
¡û
>W1511361049
JSAX01000002
Bacillota
Melissococcus plutonius 765-6B [JSAX]
356063
356145
+
Tyr
GTA
[ENA]
¡û
>W1511361079
JSAY01000003
Bacillota
Melissococcus plutonius 21.1 [JSAY]
652772
652854
+
Tyr
GTA
[ENA]
¡û
>W1511361144
JSAZ01000003
Bacillota
Melissococcus plutonius 90 [JSAZ]
192152
192234
+
Tyr
GTA
[ENA]
¡û
>W1511361181
JSBA01000002
Bacillota
Melissococcus plutonius 49.3 [JSBA]
651181
651263
+
Tyr
GTA
[ENA]
¡û
>W1511361237
JSBB01000003
Bacillota
Melissococcus plutonius 119 [JSBB]
356074
356156
+
Tyr
GTA
[ENA]
¡û
>W1511361281
JSBC01000002
Bacillota
Melissococcus plutonius H6 [JSBC]
356063
356145
+
Tyr
GTA
[ENA]
¡û
>W1511361330
JSBD01000004
Bacillota
Melissococcus plutonius L9 [JSBD]
361265
361347
+
Tyr
GTA
[ENA]
¡û
>W1511361378
JSBE01000002
Bacillota
Melissococcus plutonius 60 [JSBE]
356064
356146
+
Tyr
GTA
[ENA]
¡û
>W1511361405
JSBF01000002
Bacillota
Melissococcus plutonius 82 [JSBF]
356073
356155
+
Tyr
GTA
[ENA]
¡û
>W11143367
AEPV01000036
Bacillota
Enterococcus italicus DSM 15952 [AEPV]
595
677
+
Tyr
GTA
[ENA]
¡û
>W11143379
AEPV01000066
Bacillota
Enterococcus italicus DSM 15952 [AEPV]
81508
81425
-
Tyr
GTA
[ENA]
¡û
>W1511632588
LDDZ01000012
Bacillota
Enterococcus cecorum D-104 [LDDZ]
728
808
+
Tyr
GTA
[ENA]
¡û
>W1511632599
LDDZ01000017
Bacillota
Enterococcus cecorum D-104 [LDDZ]
38455
38374
-
Tyr
GTA
[ENA]
¡û
>W1511632668
LDEA01000047
Bacillota
Enterococcus cecorum CL-1 [LDEA]
728
809
+
Tyr
GTA
[ENA]
¡û
>W1511632682
LDEB01000010
Bacillota
Enterococcus cecorum CB-32 [LDEB]
573
653
+
Tyr
GTA
[ENA]
¡û
>W1511632692
LDEB01000017
Bacillota
Enterococcus cecorum CB-32 [LDEB]
110084
110165
+
Tyr
GTA
[ENA]
¡û
>W1511632694
LDEB01000017
Bacillota
Enterococcus cecorum CB-32 [LDEB]
110267
110348
+
Tyr
GTA
[ENA]
¡û
>W1511632696
LDEB01000017
Bacillota
Enterococcus cecorum CB-32 [LDEB]
110449
110530
+
Tyr
GTA
[ENA]
¡û
>W1511632732
LDEC01000006
Bacillota
Enterococcus cecorum G-29 [LDEC]
688
770
+
Tyr
GTA
[ENA]
¡û
>W1511632763
LDEC01000019
Bacillota
Enterococcus cecorum G-29 [LDEC]
25148
25067
-
Tyr
GTA
[ENA]
¡û
>W1511632776
LDED01000026
Bacillota
Enterococcus cecorum BB-66 [LDED]
2360
2279
-
Tyr
GTA
[ENA]
¡û
>W1511632778
LDED01000026
Bacillota
Enterococcus cecorum BB-66 [LDED]
2177
2096
-
Tyr
GTA
[ENA]
¡û
>W1511639098
LDOW01000005
Bacillota
Enterococcus cecorum 1710s23 [LDOW]
162
81
-
Tyr
GTA
[ENA]
¡û
>W1511639109
LDOW01000017
Bacillota
Enterococcus cecorum 1710s23 [LDOW]
729
809
+
Tyr
GTA
[ENA]
¡û
>W1511639127
LDOX01000001
Bacillota
Enterococcus cecorum 1711s24 [LDOX]
207226
207146
-
Tyr
GTA
[ENA]
¡û
>C121000869
AP012282
Bacillota
Melissococcus plutonius DAT561 [AP012282]
1154880
1154798
-
Tyr
GTA
[Ensembl]
¡û
>C161004027
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
948745
948827
+
Tyr
GTA
[Ensembl]
¡û
>C161023121
CP010059
Bacillota
Enterococcus cecorum CE1 [CP010059]
515956
516037
+
Tyr
GTA
-
¡û
>C161023157
CP010059
Bacillota
Enterococcus cecorum CE1 [CP010059]
2438056
2438136
+
Tyr
GTA
-
¡û
>C161023191
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
513407
513488
+
Tyr
GTA
-
¡û
>C161023206
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
2167187
2167267
+
Tyr
GTA
-
¡û
>C161023258
CP010062
Bacillota
Enterococcus cecorum CE2 [CP010062]
2435673
2435753
+
Tyr
GTA
-
¡û
>C161023274
CP010063
Bacillota
Enterococcus cecorum CE3 [CP010063]
468520
468601
+
Tyr
GTA
-
¡û
>C161023276
CP010063
Bacillota
Enterococcus cecorum CE3 [CP010063]
468703
468784
+
Tyr
GTA
-
¡û
>C161023307
CP010063
Bacillota
Enterococcus cecorum CE3 [CP010063]
2371421
2371501
+
Tyr
GTA
-
¡û
>C161023323
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
517994
518075
+
Tyr
GTA
-
¡û
>C161023325
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
518177
518258
+
Tyr
GTA
-
¡û
>C161023360
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
2225722
2225802
+
Tyr
GTA
-
¡û
>W121001850
ADLY01000037
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
97687
97770
+
Tyr
GTA
[ENA]
¡û
>W1710659522
JXKT01000001
Bacillota
Enterococcus italicus DSM 15952 [JXKT]
102026
101943
-
Tyr
GTA
[ENA]
¡û
>W1710659523
JXKT01000001
Bacillota
Enterococcus italicus DSM 15952 [JXKT]
101941
101859
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK