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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141358 (40 seq.)
>W1711504016
MKUD01000072
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
250400
250477
+
Val
GAC
[ENA]
¡û
>W1711769438
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
61891
61968
+
Val
GAC
[ENA]
¡û
>C171030729
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1599651
1599728
+
Val
GAC
-
¡û
>C171104386
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4048450
4048527
+
Val
GAC
-
¡û
>C171104440
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4043261
4043338
+
Val
GAC
-
¡û
>W131169831
ARFA01000036
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
61146
61069
-
Val
GAC
[ENA]
¡û
>W131169897
ARFC01000007
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
32627
32702
+
Val
GAC
[ENA]
¡û
>W131169936
ARFD01000031
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
26988
26911
-
Val
GAC
[ENA]
¡û
>W131181684
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
449465
449388
-
Val
GAC
[ENA]
¡û
>W141242780
CAIT01000006
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
1136709
1136632
-
Val
GAC
[ENA]
¡û
>W09109908
ABUR01000004
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
378253
378328
+
Val
GAC
[ENA]
¡û
>WENV170983810
MWVV01096254
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
441
364
-
Val
GAC
[ENA]
¡û
>C181113130
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
7965190
7965114
-
Val
GAC
-
¡û
>W1911497266
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2158402
2158477
+
Val
GAC
[ENA]
¡û
>W1911766807
QXED01000003
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
910641
910566
-
Val
GAC
[ENA]
¡û
>W1810364356
PVTE01000001
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
171562
171487
-
Val
GAC
[ENA]
¡û
>W1810692059
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1185712
1185787
+
Val
GAC
[ENA]
¡û
>SRA1015373
SRR023846.34156
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
257
180
-
Val
GAC
[SRA]
>C151068608
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3115638
3115715
+
Val
GAC
[Ensembl]
¡û
>W2010459353
JAAFZH010000019
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
79120
79043
-
Val
GAC
[ENA]
¡û
>W2010468900
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
2681907
2681832
-
Val
GAC
[ENA]
¡û
>W2011158170
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2158402
2158477
+
Val
GAC
[ENA]
¡û
>W2011324954
QXED01000003
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
910641
910566
-
Val
GAC
[ENA]
¡û
>W2011532754
SBLB01000003
Bacteroidota
Spirosoma sp. TY50 [SBLB]
494722
494799
+
Val
GAC
[ENA]
¡û
>W2011705631
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
2245097
2245020
-
Val
GAC
[ENA]
¡û
>W2012311208
WELI01000004
Bacteroidota
Rudanella sp. HX-22-17 [WELI]
20592
20668
+
Val
GAC
[ENA]
¡û
>W2012412121
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
1185712
1185787
+
Val
GAC
[ENA]
¡û
>W2012412191
WPIN01000012
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
119599
119674
+
Val
GAC
[ENA]
¡û
>W2110282951
JACWZY010000020
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
23426
23503
+
Val
GAC
[ENA]
¡û
>W2110283032
JACXAA010000007
Bacteroidota
Spirosoma validum BT704 [JACXAA]
215511
215586
+
Val
GAC
[ENA]
¡û
>C201250761
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
4022516
4022439
-
Val
GAC
-
¡û
>C211124469
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
2556800
2556725
-
Val
GAC
-
¡û
>C231263221
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
2368506
2368429
-
Val
GAC
-
¡û
>W2110772293
VFIA01000030
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
74405
74480
+
Val
GAC
[ENA]
¡û
>W2110772323
VFIC01000010
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
41231
41156
-
Val
GAC
[ENA]
¡û
>C241057094
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
4051097
4051021
-
Val
GAC
-
¡û
>C241140676
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
5084940
5085015
+
Val
GAC
-
¡û
>C241156301
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
2990306
2990382
+
Val
GAC
-
¡û
>C10111759
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2723710
2723785
+
Val
GAC
[Ensembl]
¡û
>W1710558213
FOLQ01000019
Bacteroidota
Spirosoma endophyticum [FOLQ]
31220
31145
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK