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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141384 (89 seq.)
>WENV180548430
OCIW01029262
[OCIW] human oral metagenome; human oral
100
17
-
Leu
TAG
[ENA]
¢þ
>WENV180697922
ODDE01010495
[ODDE] human metagenome; G_DNA_Supragingival plaque
849
766
-
Leu
TAG
[ENA]
¢þ
>WENV180698029
ODDE01022056
[ODDE] human metagenome; G_DNA_Supragingival plaque
284
201
-
Leu
TAG
[ENA]
¢þ
>WENV180717666
ODGE01000448
[ODGE] human metagenome; G_DNA_Buccal mucosa
7789
7706
-
Leu
TAG
[ENA]
¢þ
>WENV180734682
ODGZ01017700
[ODGZ] human metagenome; G_DNA_Supragingival plaque
179
96
-
Leu
TAG
[ENA]
¢þ
>WENV180773921
ODIJ01004275
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2221
2304
+
Leu
TAG
[ENA]
¢þ
>WENV180774114
ODIJ01008936
[ODIJ] human metagenome; G_DNA_Tongue dorsum
3017
3100
+
Leu
TAG
[ENA]
¢þ
>WENV180842530
ODKM01050272
[ODKM] human metagenome; G_DNA_Buccal mucosa
2
85
+
Leu
TAG
[ENA]
¢þ
>WENV180842567
ODKM01059836
[ODKM] human metagenome; G_DNA_Buccal mucosa
214
297
+
Leu
TAG
[ENA]
¢þ
>WENV180852977
ODKW01014783
[ODKW] human metagenome; G_DNA_Tongue dorsum
1615
1698
+
Leu
TAG
[ENA]
¢þ
>WENV180853011
ODKW01017590
[ODKW] human metagenome; G_DNA_Tongue dorsum
608
691
+
Leu
TAG
[ENA]
¢þ
>WENV180854726
ODKX01009332
[ODKX] human metagenome; G_DNA_Tongue dorsum
2453
2536
+
Leu
TAG
[ENA]
¢þ
>WENV180855005
ODKX01022646
[ODKX] human metagenome; G_DNA_Tongue dorsum
1290
1207
-
Leu
TAG
[ENA]
¢þ
>WENV180858251
ODLC01002344
[ODLC] human metagenome; G_DNA_Tongue dorsum
4899
4816
-
Leu
TAG
[ENA]
¢þ
>WENV180858287
ODLC01002716
[ODLC] human metagenome; G_DNA_Tongue dorsum
1449
1366
-
Leu
TAG
[ENA]
¢þ
>WENV180897070
ODNI01006124
[ODNI] human metagenome; G_DNA_Tongue dorsum
157
240
+
Leu
TAG
[ENA]
¢þ
>WENV180897337
ODNI01016686
[ODNI] human metagenome; G_DNA_Tongue dorsum
1485
1402
-
Leu
TAG
[ENA]
¢þ
>WENV180902450
ODOK01057638
[ODOK] human metagenome; G_DNA_Tongue dorsum
60
143
+
Leu
TAG
[ENA]
¢þ
>WENV180945752
ODUD01000032
[ODUD] human metagenome; G_DNA_Tongue dorsum
45059
45142
+
Leu
TAG
[ENA]
¢þ
>WENV180946096
ODUD01007378
[ODUD] human metagenome; G_DNA_Tongue dorsum
270
353
+
Leu
TAG
[ENA]
¢þ
>WENV180949087
ODUG01007607
[ODUG] human metagenome; G_DNA_Tongue dorsum
1575
1658
+
Leu
TAG
[ENA]
¢þ
>WENV180949182
ODUG01009678
[ODUG] human metagenome; G_DNA_Tongue dorsum
232
149
-
Leu
TAG
[ENA]
¢þ
>WENV180975434
ODUY01006279
[ODUY] human metagenome; G_DNA_Supragingival plaque
593
510
-
Leu
TAG
[ENA]
¢þ
>WENV180979301
ODVC01000068
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
50390
50473
+
Leu
TAG
[ENA]
¢þ
>WENV180979411
ODVC01000149
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
42021
41938
-
Leu
TAG
[ENA]
¢þ
>WENV180987072
ODVK01004331
[ODVK] human metagenome; G_DNA_Supragingival plaque
350
433
+
Leu
TAG
[ENA]
¢þ
>WENV180987573
ODVK01044714
[ODVK] human metagenome; G_DNA_Supragingival plaque
154
237
+
Leu
TAG
[ENA]
¢þ
>WENV180991622
ODVO01000101
[ODVO] human metagenome; G_DNA_Buccal mucosa
10789
10706
-
Leu
TAG
[ENA]
¢þ
>WENV180991755
ODVO01001095
[ODVO] human metagenome; G_DNA_Buccal mucosa
762
845
+
Leu
TAG
[ENA]
¢þ
>WENV181005951
ODWA01000248
[ODWA] human metagenome; G_DNA_Buccal mucosa
4947
5030
+
Leu
TAG
[ENA]
¢þ
>WENV181006164
ODWA01002835
[ODWA] human metagenome; G_DNA_Buccal mucosa
147
230
+
Leu
TAG
[ENA]
¢þ
>WENV181006576
ODWA01044466
[ODWA] human metagenome; G_DNA_Buccal mucosa
67
150
+
Leu
TAG
[ENA]
¢þ
>WENV181006624
ODWA01060523
[ODWA] human metagenome; G_DNA_Buccal mucosa
413
330
-
Leu
TAG
[ENA]
¢þ
>WENV181027545
ODXD01007730
[ODXD] human metagenome; G_DNA_Buccal mucosa
993
1076
+
Leu
TAG
[ENA]
¢þ
>WENV181045677
ODXW01000988
[ODXW] human metagenome; G_DNA_Tongue dorsum
4001
3918
-
Leu
TAG
[ENA]
¢þ
>WENV181045824
ODXW01001935
[ODXW] human metagenome; G_DNA_Tongue dorsum
78
161
+
Leu
TAG
[ENA]
¢þ
>WENV181051606
ODYE01000425
[ODYE] human metagenome; G_DNA_Tongue dorsum
7787
7704
-
Leu
TAG
[ENA]
¢þ
>WENV181051834
ODYE01004300
[ODYE] human metagenome; G_DNA_Tongue dorsum
3151
3068
-
Leu
TAG
[ENA]
¢þ
>WENV181057870
ODYL01001559
[ODYL] human metagenome; G_DNA_Tongue dorsum
1847
1930
+
Leu
TAG
[ENA]
¢þ
>WENV181058708
ODYL01029337
[ODYL] human metagenome; G_DNA_Tongue dorsum
682
599
-
Leu
TAG
[ENA]
¢þ
>WENV181066853
ODZI01002435
[ODZI] human metagenome; G_DNA_Supragingival plaque
3816
3899
+
Leu
TAG
[ENA]
¢þ
>WENV181066909
ODZI01003406
[ODZI] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
TAG
[ENA]
¢þ
>WENV181074271
OEAO01005249
[OEAO] human metagenome; G_DNA_Tongue dorsum
3766
3683
-
Leu
TAG
[ENA]
¢þ
>WENV181075200
OEAO01083704
[OEAO] human metagenome; G_DNA_Tongue dorsum
203
120
-
Leu
TAG
[ENA]
¢þ
>WENV181085110
OEAX01001682
[OEAX] human metagenome; G_DNA_Tongue dorsum
4462
4545
+
Leu
TAG
[ENA]
¢þ
>WENV181085389
OEAX01007594
[OEAX] human metagenome; G_DNA_Tongue dorsum
2163
2080
-
Leu
TAG
[ENA]
¢þ
>WENV181085456
OEAX01010891
[OEAX] human metagenome; G_DNA_Tongue dorsum
1823
1740
-
Leu
TAG
[ENA]
¢þ
>WENV181090804
OEBC01003963
[OEBC] human metagenome; G_DNA_Supragingival plaque
90
173
+
Leu
TAG
[ENA]
¢þ
>WENV181091153
OEBC01015205
[OEBC] human metagenome; G_DNA_Supragingival plaque
2238
2155
-
Leu
TAG
[ENA]
¢þ
>WENV181091178
OEBC01016029
[OEBC] human metagenome; G_DNA_Supragingival plaque
2015
2098
+
Leu
TAG
[ENA]
¢þ
>WENV181091444
OEBC01034343
[OEBC] human metagenome; G_DNA_Supragingival plaque
231
148
-
Leu
TAG
[ENA]
¢þ
>WENV181092263
OEBC01387259
[OEBC] human metagenome; G_DNA_Supragingival plaque
84
1
-
Leu
TAG
[ENA]
¢þ
>WENV181113046
OEEL01009635
[OEEL] human metagenome; G_DNA_Tongue dorsum
232
149
-
Leu
TAG
[ENA]
¢þ
>WENV181113151
OEEL01012939
[OEEL] human metagenome; G_DNA_Tongue dorsum
291
208
-
Leu
TAG
[ENA]
¢þ
>WENV181120065
OEFJ01003605
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
1989
2072
+
Leu
TAG
[ENA]
¢þ
>WENV181125365
OEFT01070602
[OEFT] human metagenome; G_DNA_Tongue dorsum
99
182
+
Leu
TAG
[ENA]
¢þ
>WENV181125753
OEFU01022344
[OEFU] human metagenome; G_DNA_Saliva
207
124
-
Leu
TAG
[ENA]
¢þ
>WENV181135333
OEGG01010851
[OEGG] human metagenome; G_DNA_Tongue dorsum
1230
1313
+
Leu
TAG
[ENA]
¢þ
>WENV181158934
OEIH01019452
[OEIH] human metagenome; G_DNA_Supragingival plaque
69
152
+
Leu
TAG
[ENA]
¢þ
>WENV181159356
OEIH01200449
[OEIH] human metagenome; G_DNA_Supragingival plaque
89
172
+
Leu
TAG
[ENA]
¢þ
>WENV181175989
OEJQ01101178
[OEJQ] human metagenome; G_DNA_Tongue dorsum
103
20
-
Leu
TAG
[ENA]
¢þ
>WENV181179841
OEJT01020493
[OEJT] human metagenome; G_DNA_Supragingival plaque
793
876
+
Leu
TAG
[ENA]
¢þ
>WENV181180085
OEJT01071911
[OEJT] human metagenome; G_DNA_Supragingival plaque
250
333
+
Leu
TAG
[ENA]
¢þ
>WENV181581269
OGKA01003685
[OGKA] metagenome; Human gut stool
3234
3317
+
Leu
TAG
[ENA]
¢þ
>W141157862
AXNU01000010
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
3360
3277
-
Leu
TAG
[ENA]
¡û
>W141157886
AXNU01000073
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
10539
10622
+
Leu
TAG
[ENA]
¡û
>WENV183251825
OLRI01000161
[OLRI] human gut metagenome; faeces
22310
22393
+
Leu
TAG
[ENA]
¢þ
>WENV183706589
PDWI01004762
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19233
19150
-
Leu
TAG
[ENA]
¢þ
>WENV183709001
PDWI01022571
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1377
1460
+
Leu
TAG
[ENA]
¢þ
>WENV183714196
PDWI01173131
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1359
1276
-
Leu
TAG
[ENA]
¢þ
>WENV183720187
PDWJ01028691
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
111
194
+
Leu
TAG
[ENA]
¢þ
>WENV183777719
PPYF01108696
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1585
1668
+
Leu
TAG
[ENA]
¢þ
>C181104203
CP024703
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2305 [CP024703]
1300270
1300353
+
Leu
TAG
-
¡û
>C181104229
CP024703
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2305 [CP024703]
1136838
1136755
-
Leu
TAG
-
¡û
>W09118719
ACDF01000081
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
26246
26329
+
Leu
TAG
[ENA]
¡û
>W1910212528
FMJA01000003
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
186762
186845
+
Leu
TAG
[ENA]
¡û
>W1910212541
FMJA01000004
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
62581
62664
+
Leu
TAG
[ENA]
¡û
>W1910928994
NIRN01000001
Fusobacteriota
Fusobacterium polymorphum [NIRN]
2228534
2228617
+
Leu
TAG
[ENA]
¡û
>W1910929018
NIRN01000001
Fusobacteriota
Fusobacterium polymorphum [NIRN]
1798850
1798767
-
Leu
TAG
[ENA]
¡û
>W1911431712
NXMD01000018
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
28870
28953
+
Leu
TAG
[ENA]
¡û
>W1911431732
NXMD01000051
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
199
282
+
Leu
TAG
[ENA]
¡û
>C151097755
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
82614
82697
+
Leu
TAG
-
¡û
>C151097766
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
98470
98553
+
Leu
TAG
-
¡û
>C151097815
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
2294222
2294305
+
Leu
TAG
-
¡û
>W121001340
ADDB01000003
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum F0401 [ADDB]
404372
404289
-
Leu
TAG
[ENA]
¡û
>W121001364
ADDB01000017
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum F0401 [ADDB]
7618
7535
-
Leu
TAG
[ENA]
¡û
>W121007433
AGAD01000261
Fusobacteriota
Fusobacterium sp. oral taxon 370 oral taxon 370 str. F0437 [AGAD]
4
87
+
Leu
TAG
[ENA]
¡û
>W121119282
ALVD01000007
Fusobacteriota
Fusobacterium hwasookii ChDC F128 [ALVD]
35286
35203
-
Leu
TAG
[ENA]
¡û
>W121119290
ALVD01000007
Fusobacteriota
Fusobacterium hwasookii ChDC F128 [ALVD]
4962
4879
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK