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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141397 (63 seq.)
>W1710855688
LLYZ01000002
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
392284
392361
+
Val
TAC
[ENA]
¡û
>W1710855689
LLYZ01000002
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
392392
392469
+
Val
TAC
[ENA]
¡û
>W1710877867
LMQM01000001
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
767562
767485
-
Val
TAC
[ENA]
¡û
>W1710877868
LMQM01000001
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
767454
767377
-
Val
TAC
[ENA]
¡û
>W131237043
AUMU01000008
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
95
18
-
Val
TAC
[ENA]
¡û
>W131237047
AUMU01000010
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
20
97
+
Val
TAC
[ENA]
¡û
>WENV182020034
OHBZ01008047
[OHBZ] human gut metagenome; feces
120
45
-
Val
TAC
[ENA]
¢þ
>WENV183565897
OOBZ01044189
[OOBZ] human gut metagenome; human gut
492
417
-
Val
TAC
[ENA]
¢þ
>C181061645
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
3262322
3262247
-
Val
TAC
-
¡û
>C181061646
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
3262212
3262137
-
Val
TAC
-
¡û
>C181075430
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
3204183
3204258
+
Val
TAC
-
¡û
>C191099913
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
2392654
2392729
+
Val
TAC
-
¡û
>C191099914
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
2392762
2392837
+
Val
TAC
-
¡û
>C191116180
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
342993
342918
-
Val
TAC
-
¡û
>C191116524
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4275788
4275863
+
Val
TAC
-
¡û
>C191212994
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2293158
2293082
-
Val
TAC
-
¡û
>W141809208
JPRI01000001
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
718334
718409
+
Val
TAC
[ENA]
¡û
>W141809209
JPRI01000001
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
718444
718521
+
Val
TAC
[ENA]
¡û
>W141809306
JPRJ01000016
Bacteroidota
Chryseobacterium piperi [JPRJ]
59517
59442
-
Val
TAC
[ENA]
¡û
>W141809505
JPRO01000001
Bacteroidota
Chryseobacterium luteum [JPRO]
338620
338695
+
Val
TAC
[ENA]
¡û
>W141809506
JPRO01000001
Bacteroidota
Chryseobacterium luteum [JPRO]
338730
338807
+
Val
TAC
[ENA]
¡û
>W1910341145
FTPE01000001
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
177626
177551
-
Val
TAC
[ENA]
¡û
>W1910341146
FTPE01000001
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
177517
177442
-
Val
TAC
[ENA]
¡û
>W1910439637
FWDI01000004
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
445163
445088
-
Val
TAC
[ENA]
¡û
>W1910808707
MUGO01000019
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
167654
167729
+
Val
TAC
[ENA]
¡û
>W1910808708
MUGO01000019
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
167762
167837
+
Val
TAC
[ENA]
¡û
>W1911566371
PCOU01000001
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
33961
33886
-
Val
TAC
[ENA]
¡û
>W1911701277
QNUF01000018
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
57530
57605
+
Val
TAC
[ENA]
¡û
>W1911701278
QNUF01000018
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
57639
57714
+
Val
TAC
[ENA]
¡û
>W1911701349
QNUH01000001
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
466498
466573
+
Val
TAC
[ENA]
¡û
>W1911701350
QNUH01000001
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
466608
466683
+
Val
TAC
[ENA]
¡û
>W1911701777
QNVT01000001
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
515823
515898
+
Val
TAC
[ENA]
¡û
>W1911701983
QNVW01000001
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
391336
391261
-
Val
TAC
[ENA]
¡û
>C151002559
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
575382
575459
+
Val
TAC
[Ensembl]
¡û
>W1511432515
JUGO01000010
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
227814
227737
-
Val
TAC
[ENA]
¡û
>W1511432516
JUGO01000010
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
227705
227628
-
Val
TAC
[ENA]
¡û
>W1511432977
JUGX01000003
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
489987
490062
+
Val
TAC
[ENA]
¡û
>W1511433016
JUGX01000016
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
19
96
+
Val
TAC
[ENA]
¡û
>W1511685227
LFNF01000001
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
923134
923211
+
Val
TAC
[ENA]
¡û
>W1511699487
LGIP01000003
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
396461
396538
+
Val
TAC
[ENA]
¡û
>W1511699488
LGIP01000003
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
396569
396646
+
Val
TAC
[ENA]
¡û
>W1610597210
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71507
71584
+
Val
TAC
[ENA]
¡û
>W1610718069
LLYZ01000002
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
392284
392361
+
Val
TAC
[ENA]
¡û
>W1610718070
LLYZ01000002
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
392392
392469
+
Val
TAC
[ENA]
¡û
>W1610740213
LMQM01000001
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
767562
767485
-
Val
TAC
[ENA]
¡û
>W1610740214
LMQM01000001
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
767454
767377
-
Val
TAC
[ENA]
¡û
>W1710550497
FOFI01000002
Bacteroidota
Epilithonimonas lactis [FOFI]
806572
806495
-
Val
TAC
[ENA]
¡û
>W1710550498
FOFI01000002
Bacteroidota
Epilithonimonas lactis [FOFI]
806463
806386
-
Val
TAC
[ENA]
¡û
>W1710570455
FOVD01000010
Bacteroidota
Chryseobacterium oleae [FOVD]
5867
5942
+
Val
TAC
[ENA]
¡û
>W1710570456
FOVD01000010
Bacteroidota
Chryseobacterium oleae [FOVD]
5978
6055
+
Val
TAC
[ENA]
¡û
>W1710582252
FPKW01000008
Bacteroidota
Chryseobacterium limigenitum [FPKW]
497
420
-
Val
TAC
[ENA]
¡û
>W1710582637
FQUD01000004
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
188528
188453
-
Val
TAC
[ENA]
¡û
>W1710582638
FQUD01000004
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
188418
188341
-
Val
TAC
[ENA]
¡û
>W1710590243
FRAV01000020
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
307
230
-
Val
TAC
[ENA]
¡û
>W1710594731
FSRK01000002
Bacteroidota
Epilithonimonas zeae [FSRK]
121415
121492
+
Val
TAC
[ENA]
¡û
>W1710594732
FSRK01000002
Bacteroidota
Epilithonimonas zeae [FSRK]
121523
121600
+
Val
TAC
[ENA]
¡û
>W1710598356
FTNY01000003
Bacteroidota
Chryseobacterium shigense [FTNY]
742514
742589
+
Val
TAC
[ENA]
¡û
>W1710598357
FTNY01000003
Bacteroidota
Chryseobacterium shigense [FTNY]
742624
742701
+
Val
TAC
[ENA]
¡û
>W1710598415
FTNZ01000003
Bacteroidota
Chryseobacterium joostei [FTNZ]
170399
170322
-
Val
TAC
[ENA]
¡û
>W1710598915
FTOI01000004
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
271
194
-
Val
TAC
[ENA]
¡û
>W1710598940
FTOJ01000001
Bacteroidota
Chryseobacterium piscicola [FTOJ]
14661
14584
-
Val
TAC
[ENA]
¡û
>W1710598941
FTOJ01000001
Bacteroidota
Chryseobacterium piscicola [FTOJ]
14553
14476
-
Val
TAC
[ENA]
¡û
>W1710718534
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71507
71584
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK