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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141401 (19 seq.)
>WENV180000729
FLNV01001541
[FLNV] bioreactor metagenome; Moose rumen
373
298
-
Val
CAC
[ENA]
¡û
>WENV180002652
FLNY01003126
[FLNY] bioreactor metagenome; Moose rumen
9273
9198
-
Val
CAC
[ENA]
¡û
>WENV180652397
OCVV010059199
[OCVV] gut metagenome; gut
191
116
-
Val
CAC
[ENA]
¡û
>WENV180652398
OCVV010059199
[OCVV] gut metagenome; gut
191
116
-
Val
CAC
[ENA]
¡û
>WENV180657347
OCVV010654418
[OCVV] gut metagenome; gut
110
33
-
Val
CAC
[ENA]
¡û
>WENV180657348
OCVV010654418
[OCVV] gut metagenome; gut
110
33
-
Val
CAC
[ENA]
¡û
>WENV180682931
OCVV012833111
[OCVV] gut metagenome; gut
232
157
-
Val
CAC
[ENA]
¡û
>WENV180682932
OCVV012833111
[OCVV] gut metagenome; gut
232
157
-
Val
CAC
[ENA]
¡û
>WENV170775861
LXOW01099051
[LXOW] bovine gut metagenome; Cow rumen
4161
4238
+
Val
CAC
[ENA]
¡û
>C231306081
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
1875934
1875859
-
Val
CAC
-
¡û
>C231306107
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
1948540
1948615
+
Val
CAC
-
¡û
>C231306157
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
1828730
1828805
+
Val
CAC
-
¡û
>C231306207
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
1875430
1875505
+
Val
CAC
-
¡û
>C231306259
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
1875404
1875479
+
Val
CAC
-
¡û
>C231306334
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
1676057
1675982
-
Val
CAC
-
¡û
>C231368342
CP096247
Bacteroidota
Prevotella sp. E15-22 [CP096247]
1746372
1746449
+
Val
CAC
-
¡û
>W1710516558
FNCQ01000015
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
40679
40604
-
Val
CAC
[ENA]
¡û
>W1710524635
FNIW01000017
Bacteroidota
Prevotella communis BP1-145 [FNIW]
55446
55371
-
Val
CAC
[ENA]
¡û
>W1710572095
FOWK01000008
Bacteroidota
Prevotella sp. tf2-5 [FOWK]
163541
163463
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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