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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141414 (42 seq.)
>WENV180013967
FPIC01016666
[FPIC] soil metagenome; Soil
48797
48722
-
Pro
GGG
[ENA]
¡û
>W1511638153
LDNR01000020
Unclassified
bacterium JGI-5 [LDNR] JGI-5 [LDNR]
24410
24487
+
Pro
GGG
[ENA]
¡û
>W1610122430
CZVH01000079
Unclassified
Candidatus Kryptobacter tengchongensis JGI-20 [CZVH]
3146
3221
+
Pro
GGG
[ENA]
¡û
>W1610122492
CZVJ01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-12 [CZVJ]
10600
10523
-
Pro
GGG
[ENA]
¡û
>W1610122527
CZVK01000024
Unclassified
Candidatus Kryptonium thompsoni JGI-6 [CZVK]
26801
26878
+
Pro
GGG
[ENA]
¡û
>W1610122575
CZVL01000013
Unclassified
Candidatus Kryptonium thompsoni JGI-7 [CZVL]
27312
27389
+
Pro
GGG
[ENA]
¡û
>W1610122616
CZVM01000024
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
5686
5609
-
Pro
GGG
[ENA]
¡û
>W1610122681
CZVO01000007
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
11313
11390
+
Pro
GGG
[ENA]
¡û
>W1610122702
CZVP01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-14 [CZVP]
12010
11933
-
Pro
GGG
[ENA]
¡û
>W1610122736
CZVQ01000004
Unclassified
Candidatus Kryptonium thompsoni JGI-16 [CZVQ]
9549
9626
+
Pro
GGG
[ENA]
¡û
>W1610122781
CZVS01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
24410
24487
+
Pro
GGG
[ENA]
¡û
>W1610122822
CZVT01000132
Unclassified
Candidatus Kryptonium thompsoni JGI-17 [CZVT]
253
176
-
Pro
GGG
[ENA]
¡û
>W1610122844
CZVU01000047
Unclassified
Candidatus Kryptobacter tengchongensis JGI-24 [CZVU]
5468
5543
+
Pro
GGG
[ENA]
¡û
>W1610122953
CZVX01000023
Unclassified
Candidatus Kryptonium thompsoni JGI-11 [CZVX]
3744
3667
-
Pro
GGG
[ENA]
¡û
>W1610122978
CZVY01000014
Unclassified
Candidatus Kryptonium thompsoni JGI-9 [CZVY]
23846
23769
-
Pro
GGG
[ENA]
¡û
>W1610163187
FAON01000007
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
62386
62311
-
Pro
GGG
[ENA]
¡û
>W1610163273
FAOP01000003
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
227780
227857
+
Pro
GGG
[ENA]
¡û
>W1610163370
FAOR01000141
Unclassified
Candidatus Kryptobacter tengchongensis JGI-2 [FAOR]
11859
11784
-
Pro
GGG
[ENA]
¡û
>W1610594426
LDXV01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXV]
11859
11784
-
Pro
GGG
[ENA]
¡û
>W1610594471
LDXW01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
62386
62311
-
Pro
GGG
[ENA]
¡û
>W1610594513
LDXX01000003
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
227780
227857
+
Pro
GGG
[ENA]
¡û
>W1610594561
LDXY01000012
Unclassified
Candidatus Kryptonium thompsoni [LDXY]
10600
10523
-
Pro
GGG
[ENA]
¡û
>W1710124097
CZVH01000079
Unclassified
Candidatus Kryptobacter tengchongensis JGI-20 [CZVH]
3146
3221
+
Pro
GGG
[ENA]
¡û
>W1710124159
CZVJ01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-12 [CZVJ]
10600
10523
-
Pro
GGG
[ENA]
¡û
>W1710124194
CZVK01000024
Unclassified
Candidatus Kryptonium thompsoni JGI-6 [CZVK]
26801
26878
+
Pro
GGG
[ENA]
¡û
>W1710124242
CZVL01000013
Unclassified
Candidatus Kryptonium thompsoni JGI-7 [CZVL]
27312
27389
+
Pro
GGG
[ENA]
¡û
>W1710124283
CZVM01000024
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
5686
5609
-
Pro
GGG
[ENA]
¡û
>W1710124348
CZVO01000007
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
11313
11390
+
Pro
GGG
[ENA]
¡û
>W1710124369
CZVP01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-14 [CZVP]
12010
11933
-
Pro
GGG
[ENA]
¡û
>W1710124403
CZVQ01000004
Unclassified
Candidatus Kryptonium thompsoni JGI-16 [CZVQ]
9549
9626
+
Pro
GGG
[ENA]
¡û
>W1710124448
CZVS01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
24410
24487
+
Pro
GGG
[ENA]
¡û
>W1710124489
CZVT01000132
Unclassified
Candidatus Kryptonium thompsoni JGI-17 [CZVT]
253
176
-
Pro
GGG
[ENA]
¡û
>W1710124511
CZVU01000047
Unclassified
Candidatus Kryptobacter tengchongensis JGI-24 [CZVU]
5468
5543
+
Pro
GGG
[ENA]
¡û
>W1710124620
CZVX01000023
Unclassified
Candidatus Kryptonium thompsoni JGI-11 [CZVX]
3744
3667
-
Pro
GGG
[ENA]
¡û
>W1710124645
CZVY01000014
Unclassified
Candidatus Kryptonium thompsoni JGI-9 [CZVY]
23846
23769
-
Pro
GGG
[ENA]
¡û
>W1710164854
FAON01000007
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
62386
62311
-
Pro
GGG
[ENA]
¡û
>W1710164940
FAOP01000003
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
227780
227857
+
Pro
GGG
[ENA]
¡û
>W1710165037
FAOR01000141
Unclassified
Candidatus Kryptobacter tengchongensis JGI-2 [FAOR]
11859
11784
-
Pro
GGG
[ENA]
¡û
>W1710713878
LDXV01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXV]
11859
11784
-
Pro
GGG
[ENA]
¡û
>W1710713923
LDXW01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
62386
62311
-
Pro
GGG
[ENA]
¡û
>W1710713965
LDXX01000003
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
227780
227857
+
Pro
GGG
[ENA]
¡û
>W1710714013
LDXY01000012
Unclassified
Candidatus Kryptonium thompsoni [LDXY]
10600
10523
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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