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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141434 (30 seq.)
>C171046486
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
3034546
3034623
+
Glu
TTC
-
¡û
>WENV180019801
FTCO01000947
[FTCO] metagenome; soil
856
779
-
Glu
TTC
[ENA]
¡û
>WENV180029068
FTJI01016896
[FTJI] metagenome; soil
474
550
+
Glu
TTC
[ENA]
¡û
>WENV180034590
FTKR01016608
[FTKR] metagenome; soil
474
550
+
Glu
TTC
[ENA]
¡û
>W141073123
ASRX01000032
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
5844
5921
+
Glu
TTC
[ENA]
¡û
>C08008945
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
5856368
5856291
-
Glu
TTC
[Ensembl]
¡û
>C181012514
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
7128292
7128217
-
Glu
TTC
-
¡û
>C191010034
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
5099252
5099175
-
Glu
TTC
-
¡û
>C191010094
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
7368108
7368033
-
Glu
TTC
-
¡û
>W2012350990
WJIE01000001
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
44653
44578
-
Glu
TTC
[ENA]
¡û
>C231448197
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
7324270
7324195
-
Glu
TTC
-
¡û
>W1610048969
BBEO01001443
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
1239
1164
-
Glu
TTC
[ENA]
¡û
>C131010782
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
7205888
7205813
-
Glu
TTC
[Ensembl]
¡û
>W1610520393
JELX01001743
Myxococcota
Sorangium cellulosum [JELX]
71
146
+
Glu
TTC
[ENA]
¡û
>W1610520419
JELY01000757
Myxococcota
Sorangium cellulosum [JELY]
6582
6505
-
Glu
TTC
[ENA]
¡û
>W1610520506
JELZ01002531
Myxococcota
Sorangium cellulosum [JELZ]
1020
1095
+
Glu
TTC
[ENA]
¡û
>W1610520549
JEMA01001044
Myxococcota
Sorangium cellulosum [JEMA]
964
1041
+
Glu
TTC
[ENA]
¡û
>W1610520561
JEMB01000904
Myxococcota
Sorangium cellulosum [JEMB]
10138
10061
-
Glu
TTC
[ENA]
¡û
>W1610520629
JEMC01001888
Myxococcota
Sorangium cellulosum [JEMC]
74
149
+
Glu
TTC
[ENA]
¡û
>W1610520666
JEMD01001097
Myxococcota
Sorangium cellulosum [JEMD]
5461
5536
+
Glu
TTC
[ENA]
¡û
>W1610520769
JEME01003363
Myxococcota
Sorangium cellulosum [JEME]
13185
13110
-
Glu
TTC
[ENA]
¡û
>W1710045441
BBEO01001443
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
1239
1164
-
Glu
TTC
[ENA]
¡û
>W1710615871
JELX01001743
Myxococcota
Sorangium cellulosum [JELX]
71
146
+
Glu
TTC
[ENA]
¡û
>W1710615897
JELY01000757
Myxococcota
Sorangium cellulosum [JELY]
6582
6505
-
Glu
TTC
[ENA]
¡û
>W1710615984
JELZ01002531
Myxococcota
Sorangium cellulosum [JELZ]
1020
1095
+
Glu
TTC
[ENA]
¡û
>W1710616027
JEMA01001044
Myxococcota
Sorangium cellulosum [JEMA]
964
1041
+
Glu
TTC
[ENA]
¡û
>W1710616039
JEMB01000904
Myxococcota
Sorangium cellulosum [JEMB]
10138
10061
-
Glu
TTC
[ENA]
¡û
>W1710616107
JEMC01001888
Myxococcota
Sorangium cellulosum [JEMC]
74
149
+
Glu
TTC
[ENA]
¡û
>W1710616144
JEMD01001097
Myxococcota
Sorangium cellulosum [JEMD]
5461
5536
+
Glu
TTC
[ENA]
¡û
>W1710616247
JEME01003363
Myxococcota
Sorangium cellulosum [JEME]
13185
13110
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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