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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141435 (41 seq.)
>WENV180016783
FSVW01001952
[FSVW] metagenome; soil
4128
4051
-
Pro
GGG
[ENA]
¡û
>WENV180016859
FSVX01000767
[FSVX] metagenome; soil
1723
1646
-
Pro
GGG
[ENA]
¡û
>WENV180020694
FTDA01001394
[FTDA] metagenome; soil
12537
12613
+
Pro
GGG
[ENA]
¡û
>WENV180583674
OCNB01164188
[OCNB] metagenome; diffuse fluid
173
250
+
Pro
GGG
[ENA]
¡û
>W141073142
ASRX01000077
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
40535
40610
+
Pro
GGG
[ENA]
¡û
>WENV181171871
OEIV010388664
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
130
55
-
Pro
GGG
[ENA]
¡û
>WENV181223333
OFDC01007210
[OFDC] hot springs metagenome; Water
1112
1189
+
Pro
GGG
[ENA]
¡û
>C08008958
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
2383695
2383620
-
Pro
GGG
[Ensembl]
¡û
>WENV183093245
OLLW01000435
[OLLW] soil metagenome; soil
17156
17079
-
Pro
GGG
[ENA]
¡û
>WENV183706631
PDWI01004891
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8261
8338
+
Pro
GGG
[ENA]
¡û
>WENV183717291
PDWJ01000695
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
71760
71837
+
Pro
GGG
[ENA]
¡û
>WENV183721207
PDWJ01059165
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
177
102
-
Pro
GGG
[ENA]
¡û
>WENV170564652
CZKU01000028
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
2601
2678
+
Pro
GGG
[ENA]
¡û
>WENV170634849
JAHE01097657
[JAHE] sediment metagenome; lake sediment
30
107
+
Pro
GGG
[ENA]
¡û
>C181012527
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
2965769
2965694
-
Pro
GGG
-
¡û
>C191010050
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
2091103
2091028
-
Pro
GGG
-
¡û
>C191010107
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
3069273
3069198
-
Pro
GGG
-
¡û
>C151092019
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
4156277
4156202
-
Pro
GGG
-
¡û
>W2010370095
CAHJWM010000006
Myxococcota
Myxococcales bacterium [CAHJWM]
77567
77490
-
Pro
GGG
[ENA]
¡û
>W2011690764
SSMQ01000006
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
141565
141640
+
Pro
GGG
[ENA]
¡û
>W2011690841
SSMR01000001
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
130130
130055
-
Pro
GGG
[ENA]
¡û
>W2012350991
WJIE01000002
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
54320
54395
+
Pro
GGG
[ENA]
¡û
>C231161625
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
7051088
7051013
-
Pro
GGG
-
¡û
>C231448210
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
3069305
3069230
-
Pro
GGG
-
¡û
>C131010794
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
3020130
3020055
-
Pro
GGG
[Ensembl]
¡û
>W1610520394
JELX01001777
Myxococcota
Sorangium cellulosum [JELX]
1909
1834
-
Pro
GGG
[ENA]
¡û
>W1610520449
JELY01002555
Myxococcota
Sorangium cellulosum [JELY]
119
194
+
Pro
GGG
[ENA]
¡û
>W1610520500
JELZ01002269
Myxococcota
Sorangium cellulosum [JELZ]
2904
2829
-
Pro
GGG
[ENA]
¡û
>W1610520542
JEMA01000840
Myxococcota
Sorangium cellulosum [JEMA]
12191
12116
-
Pro
GGG
[ENA]
¡û
>W1610520578
JEMB01001863
Myxococcota
Sorangium cellulosum [JEMB]
628
553
-
Pro
GGG
[ENA]
¡û
>W1610520657
JEMC01003888
Myxococcota
Sorangium cellulosum [JEMC]
336
411
+
Pro
GGG
[ENA]
¡û
>W1610520669
JEMD01001293
Myxococcota
Sorangium cellulosum [JEMD]
603
678
+
Pro
GGG
[ENA]
¡û
>W1610520736
JEME01001697
Myxococcota
Sorangium cellulosum [JEME]
2981
2906
-
Pro
GGG
[ENA]
¡û
>W1710615872
JELX01001777
Myxococcota
Sorangium cellulosum [JELX]
1909
1834
-
Pro
GGG
[ENA]
¡û
>W1710615927
JELY01002555
Myxococcota
Sorangium cellulosum [JELY]
119
194
+
Pro
GGG
[ENA]
¡û
>W1710615978
JELZ01002269
Myxococcota
Sorangium cellulosum [JELZ]
2904
2829
-
Pro
GGG
[ENA]
¡û
>W1710616020
JEMA01000840
Myxococcota
Sorangium cellulosum [JEMA]
12191
12116
-
Pro
GGG
[ENA]
¡û
>W1710616056
JEMB01001863
Myxococcota
Sorangium cellulosum [JEMB]
628
553
-
Pro
GGG
[ENA]
¡û
>W1710616135
JEMC01003888
Myxococcota
Sorangium cellulosum [JEMC]
336
411
+
Pro
GGG
[ENA]
¡û
>W1710616147
JEMD01001293
Myxococcota
Sorangium cellulosum [JEMD]
603
678
+
Pro
GGG
[ENA]
¡û
>W1710616214
JEME01001697
Myxococcota
Sorangium cellulosum [JEME]
2981
2906
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK