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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141785 (10 seq.)
>w027424
ABCE01000005
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
179774
179697
-
Asn
GTT
[ENA]
¡û
>WENV170014980
AZIC01011838
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
518
593
+
Asn
GTT
[ENA]
¡û
>WENV170121014
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
101278
101203
-
Asn
GTT
[ENA]
¡û
>W2012143729
VTSR01000001
Planctomycetota
Gimesia sp. JC646 [VTSR]
203659
203584
-
Asn
GTT
[ENA]
¡û
>C241044018
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
2281838
2281913
+
Asn
GTT
-
¡û
>C241044512
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
2637364
2637289
-
Asn
GTT
-
¡û
>C241044536
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
2236800
2236875
+
Asn
GTT
-
¡û
>C241069925
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
2256430
2256505
+
Asn
GTT
-
¡û
>C241083595
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
1572345
1572270
-
Asn
GTT
-
¡û
>C241083638
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5443033
5442958
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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