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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.141790 (23 seq.)
>W1711191158
LWSJ01000093
Planctomycetota
Roseimaritima ulvae [LWSJ]
181377
181302
-
Pro
TGG
[ENA]
¡û
>C171064821
CP017641
Planctomycetota
Fuerstiella marisgermanici NH11 [CP017641]
5008822
5008897
+
Pro
TGG
-
¡û
>WENV180085171
MPMD02290775
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
591
514
-
Pro
TGG
[ENA]
¡û
>WENV180368414
OBOF01080731
[OBOF] marine metagenome; ENVO:00002010
61
136
+
Pro
TGG
[ENA]
¡û
>WENV180389494
OBPJ01028512
[OBPJ] marine metagenome; seawater
312
387
+
Pro
TGG
[ENA]
¡û
>WENV181838150
OGVM01013502
[OGVM] freshwater metagenome; freshwater
233
157
-
Pro
TGG
[ENA]
¡û
>WENV182560663
OJDU01018021
[OJDU] seawater metagenome; Sea water
267
342
+
Pro
TGG
[ENA]
¡û
>WENV170422116
CEUN01134447
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
237
314
+
Pro
TGG
[ENA]
¡û
>WENV170475072
CEVH01214958
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
204
279
+
Pro
TGG
[ENA]
¡û
>WENV170485333
CEVN01097474
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
248
173
-
Pro
TGG
[ENA]
¡û
>WENV170557529
CXWL01029327
[CXWL] groundwater metagenome; biofilm material
930
1007
+
Pro
TGG
[ENA]
¡û
>WENV170816369
MDSX01029436
[MDSX] marine metagenome; seawater
355
430
+
Pro
TGG
[ENA]
¡û
>W2011588326
SIHI01000001
Planctomycetota
Planctomycetes bacterium KOR42 [SIHI]
1213378
1213453
+
Pro
TGG
[ENA]
¡û
>W2011610757
SJPS01000002
Planctomycetota
Planctomycetes bacterium Pla144 [SJPS]
517835
517910
+
Pro
TGG
[ENA]
¡û
>W2011610950
SJPV01000010
Planctomycetota
Planctomycetes bacterium Poly41 [SJPV]
190091
190165
+
Pro
TGG
[ENA]
¡û
>W2012143740
VTSR01000005
Planctomycetota
Gimesia sp. JC646 [VTSR]
150101
150026
-
Pro
TGG
[ENA]
¡û
>W2012331928
WIAD01000016
Planctomycetota
Roseimaritima sp. JC651 [WIAD]
2331
2406
+
Pro
TGG
[ENA]
¡û
>C241043687
CP036262
Planctomycetota
Roseimaritima multifibrata FF011L [CP036262]
2462878
2462953
+
Pro
TGG
-
¡û
>C241044047
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
7159388
7159313
-
Pro
TGG
-
¡û
>C241044496
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
7377991
7377916
-
Pro
TGG
-
¡û
>C241070138
CP042914
Planctomycetota
Roseimaritima ulvae UC8 [CP042914]
3263388
3263313
-
Pro
TGG
-
¡û
>C241083566
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
4533945
4534020
+
Pro
TGG
-
¡û
>W1610992761
LWSJ01000093
Planctomycetota
Roseimaritima ulvae [LWSJ]
181377
181302
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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